C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027908 Spata17-201 ENSMUSG00000026611 10090 - 1:187048407-187215446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonLiverLungMuscleOvaryENSMUST00000027908
Transcript ID Adipose Breast Colon Liver Lung Muscle Ovary
ENSMUST00000027908 0.129±0.10 0.090±0.03 0.089±0.01 0.047±0.02 0.561±0.00 0.057±0.00 0.248±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00086U CIL_00086U_0002 VISTA 1:186608316-187210077
CIL_00086S CIL_00086S_0002 VISTA 1:186622310-187223505
CIL_0007JY CIL_0007JY_0002 UCNEbase 1:186701249-188943182
CIL_000994 CIL_000994_0002 VISTA 1:186948277-187549469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005516 IEA calmodulin binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366933 SPATA17-001 protein_coding Homo_sapiens 0 706
ENST00000470448 SPATA17-002 nonsense_mediated_decay Homo_sapiens 0 364

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