C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000994_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs734 VISTA 9606 1:217292780-217894009
GeneTranscriptPositionBiotype
ENSG00000092978 (GPATCH2)
G patch domain containing 2 		ENST00000366934 (GPATCH2-002) 217608184-217631082 protein_coding
ENST00000366935 (GPATCH2-001) 217426992-217631082 protein_coding
ENST00000470014 (GPATCH2-005) 217492501-217610400 processed_transcript
ENST00000485274 (GPATCH2-003) 217498180-217610379 processed_transcript
ENST00000489246 (GPATCH2-004) 217491506-217498764 processed_transcript
ENSG00000162814 (SPATA17)
spermatogenesis associated 17 		ENST00000366933 (SPATA17-001) 217631324-217871696 protein_coding
ENST00000470448 (SPATA17-002) 217631324-217774424 nonsense_mediated_decay
ENST00000471021 (SPATA17-004) 217801718-217867588 processed_transcript
ENST00000491809 (SPATA17-005) 217862775-217867133 processed_transcript
ENST00000492747 (SPATA17-003) 217737844-217801768 processed_transcript
ENSG00000228247 (UBBP2)
ubiquitin B pseudogene 2 		ENST00000376781 (UBBP2-001) 217850403-217850633 processed_pseudogene
ENSG00000231814 (LINC00210)
long intergenic non-protein coding RNA 210 		ENST00000431637 (LINC00210-001) 217892900-217920804 lincRNA
ENSG00000234070 (SPATA17-AS1)
SPATA17 antisense RNA 1 		ENST00000415765 (SPATA17-AS1-001) 217781198-217785120 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_000994_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs734 VISTA 10090 1:186948277-187549469
GeneTranscriptPositionBiotype
ENSMUSG00000026611 (Spata17)
spermatogenesis associated 17 		ENSMUST00000027908 (Spata17-201) 187048407-187215446 protein_coding
ENSMUST00000110945 (Spata17-003) 187135293-187215421 protein_coding
ENSMUST00000183469 (Spata17-002) 187188861-187215446 processed_transcript
ENSMUST00000183656 (Spata17-006) 187135300-187143084 processed_transcript
ENSMUST00000183819 (Spata17-001) 187044648-187215465 protein_coding
ENSMUST00000183931 (Spata17-007) 187117263-187215437 protein_coding
ENSMUST00000183996 (Spata17-005) 187112484-187142904 protein_coding
ENSMUST00000184543 (Spata17-004) 187135293-187143097 protein_coding
ENSMUSG00000039224 (D1Pas1)
DNA segment, Chr 1, Pasteur Institute 1 		ENSMUST00000045108 (D1Pas1-001) 186967416-186970627 protein_coding
ENSMUSG00000089730 (1700007P06Rik)
RIKEN cDNA 1700007P06 gene 		ENSMUST00000160380 (1700007P06Rik-001) 187125138-187127852 antisense
ENSMUSG00000089831 (Gm15508)
predicted gene 15508 		ENSMUST00000160330 (Gm15508-001) 187073011-187073335 processed_pseudogene
ENSMUSG00000089947 (Gm15509)
predicted gene 15509 		ENSMUST00000162615 (Gm15509-001) 187120869-187124365 sense_intronic
ENSMUSG00000097935 (Gm3809)
predicted gene 3809 		ENSMUST00000180973 (Gm3809-001) 186960508-186961513 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000994_0001ENSG00000092978ENST00000366934ENST00000366935ENST00000470014ENST00000485274ENST00000489246ENSG00000162814ENST00000366933ENST00000470448ENST00000471021ENST00000491809ENST00000492747ENSG00000228247ENST00000376781ENSG00000231814ENST00000431637ENSG00000234070ENST00000415765CIL_000994_0002ENSMUSG00000026611ENSMUST00000027908ENSMUST00000110945ENSMUST00000183469ENSMUST00000183656ENSMUST00000183819ENSMUST00000183931ENSMUST00000183996ENSMUST00000184543ENSMUSG00000039224ENSMUST00000045108ENSMUSG00000089730ENSMUST00000160380ENSMUSG00000089831ENSMUST00000160330ENSMUSG00000089947ENSMUST00000162615ENSMUSG00000097935ENSMUST00000180973
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000994_0001ENSG00000092978ENST00000366934ENST00000366935ENSG00000162814ENST00000366933ENST00000470448ENST00000471021ENST00000491809ENST00000492747ENSG00000228247ENST00000376781ENSG00000231814ENST00000431637ENSG00000234070ENST00000415765CIL_000994_0002ENSMUSG00000026611ENSMUST00000027908ENSMUST00000110945ENSMUST00000183469ENSMUST00000183656ENSMUST00000183819ENSMUST00000183931ENSMUST00000183996ENSMUST00000184543ENSMUSG00000039224ENSMUST00000045108ENSMUSG00000089730ENSMUST00000160380ENSMUSG00000089831ENSMUST00000160330ENSMUSG00000089947ENSMUST00000162615ENSMUSG00000097935ENSMUST00000180973
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000092978 ENST00000366934 0.555±0.00 1.078±0.00 0.870±0.00 1.010±0.60 1.922±1.12 2.237±0.56 0.466±0.07 0.854±0.31 1.730±1.44 2.267±1.71 0.226±0.01 2.261±0.83 0.821±0.06 1.877±0.00
ENST00000366935 0.372±0.00 0.732±0.00 0.677±0.00 1.013±0.00 0.539±0.02 0.619±0.38 0.554±0.30 0.515±0.10 0.606±0.30 0.415±0.00 0.252±0.00 0.521±0.04 0.528±0.07 1.625±0.33
ENST00000470014 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489246 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000162814 ENST00000366933 0.017±0.00 0.031±0.00 0.185±0.00 0.097±0.00 0.113±0.00 0.008±0.00 0.019±0.00 0.165±0.00 0.010±0.00 0.303±0.00 0.020±0.00 0.108±0.07 0.020±0.00 1.184±0.00
ENST00000470448 N/A N/A N/A 0.367±0.00 0.111±0.00 0.066±0.00 0.096±0.03 N/A 0.146±0.12 0.929±0.00 0.119±0.00 0.603±0.00 N/A 18.928±0.00
ENST00000471021 0.064±0.00 N/A N/A N/A 0.207±0.00 N/A 0.204±0.00 0.371±0.00 N/A 1.241±0.00 N/A 0.615±0.37 0.100±0.08 14.921±0.00
ENST00000491809 0.264±0.00 0.781±0.00 N/A N/A N/A N/A 0.371±0.00 N/A N/A N/A 0.157±0.00 N/A N/A N/A
ENST00000492747 0.050±0.00 0.237±0.00 0.449±0.00 N/A 0.111±0.00 0.029±0.00 N/A N/A 0.448±0.00 1.322±0.00 N/A 0.554±0.58 0.191±0.00 28.066±0.00
ENSG00000228247 ENST00000376781 0.080±0.00 1.286±0.00 N/A 0.644±0.00 0.631±0.00 0.413±0.00 0.610±0.00 0.346±0.00 0.525±0.00 0.670±0.00 0.148±0.00 3.293±0.00 N/A 0.846±0.00
ENSG00000231814 ENST00000431637 N/A N/A N/A 0.009±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234070 ENST00000415765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026611 ENSMUST00000027908 0.129±0.10 N/A N/A N/A 0.090±0.03 0.089±0.01 N/A N/A 0.047±0.02 0.561±0.00 0.057±0.00 0.248±0.00 N/A N/A
ENSMUST00000110945 N/A N/A 0.022±0.00 0.075±0.00 N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A 16.578±6.84
ENSMUST00000183469 0.037±0.00 N/A N/A N/A N/A N/A N/A 0.206±0.00 0.049±0.02 N/A N/A 0.367±0.00 0.068±0.02 N/A
ENSMUST00000183656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.526±1.12
ENSMUST00000183819 0.132±0.02 0.530±0.27 0.018±0.00 0.220±0.09 0.146±0.06 0.146±0.03 0.144±0.00 0.459±0.22 0.073±0.03 1.056±0.05 0.042±0.02 0.879±0.38 0.227±0.09 24.029±0.73
ENSMUST00000183931 N/A N/A N/A N/A N/A 0.208±0.00 N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A
ENSMUST00000183996 0.320±0.17 0.353±0.13 0.037±0.01 N/A 0.288±0.20 0.463±0.28 0.172±0.00 1.486±0.87 0.081±0.02 1.081±0.18 0.063±0.00 2.725±1.09 N/A 19.815±2.74
ENSMUST00000184543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.627±4.77
ENSMUSG00000039224 ENSMUST00000045108 N/A N/A 0.007±0.00 0.008±0.00 0.018±0.00 N/A 0.023±0.00 0.032±0.01 0.008±0.00 N/A N/A 0.017±0.00 0.112±0.06 60.815±29.08
ENSMUSG00000089730 ENSMUST00000160380 0.060±0.01 N/A N/A 0.384±0.00 0.142±0.00 N/A 0.057±0.00 0.143±0.05 0.050±0.03 0.090±0.00 N/A 0.058±0.00 N/A 58.895±74.99
ENSMUSG00000089831 ENSMUST00000160330 N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 0.191±0.00
ENSMUSG00000089947 ENSMUST00000162615 N/A N/A N/A 0.008±0.00 N/A N/A 0.014±0.00 0.017±0.00 0.010±0.00 0.024±0.00 N/A N/A N/A 1.585±0.85
ENSMUSG00000097935 ENSMUST00000180973 0.094±0.03 0.059±0.01 0.225±0.22 0.211±0.04 0.175±0.13 0.077±0.02 0.220±0.03 0.111±0.09 0.117±0.12 0.087±0.00 0.068±0.03 0.259±0.22 0.042±0.04 1.061±0.37

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