C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatid perinuclear RNA binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028279 Strbp-201 ENSMUSG00000026915 10090 - 2:37569868-37647285 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028279
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028279 1.204±0.18 1.153±0.00 5.147±3.03 1.004±0.00 1.239±0.47 0.364±0.02 1.969±0.00 0.749±0.19 1.811±0.00 0.689±0.15 2.227±0.81 0.618±0.00 1.622±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WQ CIL_0006WQ_0002 CGP 2:37432168-37566454

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003725 IDA double-stranded RNA binding
GO:0003727 IDA single-stranded RNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006928 IMP cellular component movement
GO:0007275 IEA multicellular organismal development
GO:0007286 IMP spermatid development
GO:0007638 IMP mechanosensory behavior
GO:0015630 IDA microtubule cytoskeleton
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000348403 STRBP-001 protein_coding Homo_sapiens 0 4337
ENST00000360998 STRBP-003 protein_coding Homo_sapiens 0 3818
ENST00000407982 STRBP-002 nonsense_mediated_decay Homo_sapiens 0 2813
ENST00000447404 STRBP-201 protein_coding Homo_sapiens 0 4754
ENST00000471564 STRBP-006 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000478973 STRBP-008 nonsense_mediated_decay Homo_sapiens 0 241
ENST00000479114 STRBP-007 protein_coding Homo_sapiens 0 492
ENST00000492885 STRBP-004 retained_intron Homo_sapiens 0 407
ENST00000496533 STRBP-005 nonsense_mediated_decay Homo_sapiens 0 346
ENST00000530364 STRBP-009 processed_transcript Homo_sapiens 0 213

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