C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026979 Psd4 10090 + 2:24367580-24409182 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056641 Psd4-002 24385332-24408729 protein_coding
  ENSMUST00000102942 Psd4-001 24367610-24409182 protein_coding
  ENSMUST00000127242 Psd4-007 24386569-24394591 processed_transcript
  ENSMUST00000131930 Psd4-006 24385353-24394305 processed_transcript
  ENSMUST00000132924 Psd4-008 24405629-24407007 processed_transcript
  ENSMUST00000133730 Psd4-005 24385336-24397320 processed_transcript
  ENSMUST00000140303 Psd4-009 24401036-24403252 processed_transcript
  ENSMUST00000140547 Psd4-003 24367580-24394258 processed_transcript
  ENSMUST00000142522 Psd4-004 24385335-24394411 processed_transcript
  ENSMUST00000166388 Psd4-201 24386617-24408200 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056641ENSMUST00000102942ENSMUST00000127242ENSMUST00000131930ENSMUST00000132924ENSMUST00000133730ENSMUST00000140303ENSMUST00000140547ENSMUST00000166388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056641 0.756±0.63 0.305±0.12 3.380±0.02 0.063±0.04 5.588±2.09 6.172±0.84 0.129±0.03 0.314±0.11 2.573±1.48 2.127±0.59 0.217±0.22 1.430±0.32 6.893±3.65 0.085±0.03
ENSMUST00000102942 0.534±0.28 0.119±0.06 1.933±0.01 0.023±0.00 1.714±0.17 5.712±0.93 0.048±0.02 0.066±0.01 0.585±0.41 0.713±0.14 0.030±0.00 1.357±0.53 3.640±1.95 0.100±0.00
ENSMUST00000127242 N/A 0.690±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A
ENSMUST00000132924 N/A N/A N/A 2.163±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133730 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.118±0.00 N/A N/A N/A
ENSMUST00000140303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.193±0.00
ENSMUST00000140547 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.595±0.00 N/A N/A
ENSMUST00000166388 0.342±0.14 0.117±0.02 1.234±0.00 0.062±0.00 3.117±1.60 3.469±0.00 0.235±0.09 0.411±0.07 0.699±0.56 1.197±0.71 0.133±0.13 1.032±0.34 5.170±3.45 0.157±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0002 CGP 2:24336853-24409182
CIL_000196 CIL_000196_0002 CGP 2:24367580-24475599

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005886 IEA plasma membrane
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000125637 PSD4 pleckstrin and Sec7 domain containing 4 protein_coding Homo_sapiens

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