C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pleckstrin and Sec7 domain containing 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000125637 PSD4 9606 + 2:113157325-113209396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000245796 PSD4-001 113173971-113203237 protein_coding
  ENST00000409378 PSD4-010 113196280-113201330 protein_coding
  ENST00000409656 PSD4-004 113185044-113201566 nonsense_mediated_decay
  ENST00000418251 PSD4-002 113173980-113203225 retained_intron
  ENST00000441564 PSD4-003 113173997-113209396 protein_coding
  ENST00000460725 PSD4-005 113197195-113202912 retained_intron
  ENST00000464559 PSD4-006 113198558-113202912 retained_intron
  ENST00000465592 PSD4-011 113197342-113198830 retained_intron
  ENST00000465917 PSD4-012 113157325-113183044 processed_transcript
  ENST00000485525 PSD4-007 113173972-113185750 processed_transcript
  ENST00000487574 PSD4-009 113196149-113198189 retained_intron
  ENST00000493329 PSD4-008 113193848-113196607 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000245796ENST00000409656ENST00000418251ENST00000441564ENST00000464559ENST00000465917
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000245796 0.229±0.00 8.401±0.00 N/A 0.523±0.41 0.791±0.26 0.840±0.50 0.235±0.00 3.298±1.86 5.880±0.00 2.388±0.95 N/A 4.893±4.32 7.218±0.83 0.687±0.34
ENST00000409656 0.442±0.00 N/A N/A 1.000±0.00 1.081±0.00 1.906±0.00 0.189±0.09 N/A 0.646±0.00 1.307±0.00 0.076±0.00 10.556±6.79 6.682±0.00 1.946±0.00
ENST00000418251 N/A 3.432±0.00 N/A N/A N/A N/A N/A N/A 0.211±0.00 N/A N/A 1.249±0.00 N/A N/A
ENST00000441564 N/A N/A N/A N/A 0.255±0.00 N/A 0.044±0.02 N/A N/A N/A 0.025±0.01 1.290±0.82 0.909±0.00 N/A
ENST00000464559 0.775±0.00 10.313±0.00 N/A N/A 2.476±0.00 1.336±0.00 0.337±0.00 5.133±0.00 11.787±0.00 3.605±0.00 0.214±0.00 8.886±5.92 8.813±1.28 1.959±0.48
ENST00000465917 N/A N/A 1.789±0.00 N/A 2.040±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0001 CGP 2:113107214-113209396
CIL_000196 CIL_000196_0001 CGP 2:113157325-113278950

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005086 IBA:IEA ARF guanyl-nucleotide exchange factor activity
GO:0005543 IEA phospholipid binding
GO:0005886 IEA plasma membrane
GO:0016020 IDA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000026979 Psd4 pleckstrin and Sec7 domain containing 4 protein_coding Mus_musculus

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