C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056641 Psd4-002 ENSMUSG00000026979 10090 + 2:24385332-24408729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056641 0.756±0.63 0.305±0.12 3.380±0.02 0.063±0.04 5.588±2.09 6.172±0.84 0.129±0.03 0.314±0.11 2.573±1.48 2.127±0.59 0.217±0.22 1.430±0.32 6.893±3.65 0.085±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0002 CGP 2:24336853-24409182
CIL_000196 CIL_000196_0002 CGP 2:24367580-24475599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005886 IEA plasma membrane
GO:0008289 IEA lipid binding
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245796 PSD4-001 protein_coding Homo_sapiens 0 1524
ENST00000409378 PSD4-010 protein_coding Homo_sapiens 0 309
ENST00000409656 PSD4-004 nonsense_mediated_decay Homo_sapiens 0 1524
ENST00000418251 PSD4-002 retained_intron Homo_sapiens 0 1537
ENST00000441564 PSD4-003 protein_coding Homo_sapiens 0 1537
ENST00000460725 PSD4-005 retained_intron Homo_sapiens 0 749
ENST00000464559 PSD4-006 retained_intron Homo_sapiens 0 466
ENST00000465917 PSD4-012 processed_transcript Homo_sapiens 2e-30 137
ENST00000493329 PSD4-008 retained_intron Homo_sapiens 0 324

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