C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pleckstrin and Sec7 domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102942 Psd4-001 ENSMUSG00000026979 10090 + 2:24367610-24409182 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102942 0.534±0.28 0.119±0.06 1.933±0.01 0.023±0.00 1.714±0.17 5.712±0.93 0.048±0.02 0.066±0.01 0.585±0.41 0.713±0.14 0.030±0.00 1.357±0.53 3.640±1.95 0.100±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000191 CIL_000191_0002 CGP 2:24336853-24409182
CIL_000196 CIL_000196_0002 CGP 2:24367580-24475599

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005886 IEA plasma membrane
GO:0008289 IEA lipid binding
GO:0016020 IEA membrane
GO:0030054 IBA cell junction
GO:0030182 IBA neuron differentiation
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245796 PSD4-001 protein_coding Homo_sapiens 0 1524
ENST00000409378 PSD4-010 protein_coding Homo_sapiens 0 309
ENST00000409656 PSD4-004 nonsense_mediated_decay Homo_sapiens 0 1524
ENST00000418251 PSD4-002 retained_intron Homo_sapiens 0 1537
ENST00000441564 PSD4-003 protein_coding Homo_sapiens 0 1537
ENST00000460725 PSD4-005 retained_intron Homo_sapiens 0 749
ENST00000464559 PSD4-006 retained_intron Homo_sapiens 0 466
ENST00000465917 PSD4-012 processed_transcript Homo_sapiens 2e-30 137
ENST00000493329 PSD4-008 retained_intron Homo_sapiens 0 324

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