C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: myelin basic protein expression factor 2, repressor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027201 Myef2 10090 - 2:125084628-125123661 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067780 Myef2-201 125087742-125123660 protein_coding
  ENSMUST00000089825 Myef2-002 125088834-125116873 protein_coding
  ENSMUST00000110501 Myef2-008 125086271-125123595 nonsense_mediated_decay
  ENSMUST00000129945 Myef2-007 125084628-125089011 processed_transcript
  ENSMUST00000137091 Myef2-004 125095708-125123414 protein_coding
  ENSMUST00000142718 Myef2-005 125087741-125123623 protein_coding
  ENSMUST00000147105 Myef2-003 125087742-125123661 protein_coding
  ENSMUST00000149911 Myef2-009 125099635-125123575 retained_intron
  ENSMUST00000152367 Myef2-001 125086568-125123626 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067780ENSMUST00000089825ENSMUST00000129945ENSMUST00000142718ENSMUST00000147105ENSMUST00000152367
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067780 1.195±0.00 N/A 3.974±0.75 37.835±0.41 1.255±0.00 1.022±0.29 1.260±0.10 1.548±0.10 4.063±1.99 2.656±0.00 0.535±0.15 6.003±0.62 2.422±1.08 12.519±0.49
ENSMUST00000089825 N/A N/A N/A 45.123±0.00 N/A N/A 0.606±0.00 N/A 9.089±4.32 N/A N/A 24.827±16.24 6.540±3.90 25.369±27.60
ENSMUST00000129945 1.257±0.00 N/A N/A 10.664±0.00 N/A N/A N/A 0.457±0.00 2.541±1.57 N/A 0.181±0.04 2.416±0.21 N/A N/A
ENSMUST00000142718 1.943±0.58 5.099±1.82 2.847±0.11 21.250±10.21 1.860±1.08 2.045±1.21 0.684±0.04 1.374±0.57 2.938±2.42 5.228±0.00 0.311±0.09 5.739±3.11 4.263±1.92 5.515±0.00
ENSMUST00000147105 2.732±1.55 3.733±0.00 N/A N/A 3.831±1.44 2.145±0.15 N/A 1.304±0.42 4.301±3.20 4.480±1.41 0.165±0.00 7.171±3.86 N/A 3.298±0.00
ENSMUST00000152367 2.511±0.00 12.027±5.51 N/A N/A 3.211±0.88 2.542±0.84 N/A 0.742±0.00 0.955±0.46 4.317±1.25 N/A 13.027±7.62 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0002 CGP 2:124089969-125088677
CIL_0004QO CIL_0004QO_0003 CGP 2:125068124-125123661
CIL_0004NI CIL_0004NI_0002 CGP 2:125084628-125147839

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059398 myef2 myelin expression factor 2 protein_coding Danio_rerio
ENSG00000104177 MYEF2 myelin expression factor 2 protein_coding Homo_sapiens

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