C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myelin basic protein expression factor 2, repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152367 Myef2-001 ENSMUSG00000027201 10090 - 2:125086568-125123626 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENSMUST00000152367
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENSMUST00000152367 2.511±0.00 12.027±5.51 3.211±0.88 2.542±0.84 0.742±0.00 0.955±0.46 4.317±1.25 13.027±7.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0002 CGP 2:124089969-125088677
CIL_0004QO CIL_0004QO_0003 CGP 2:125068124-125123661
CIL_0004NI CIL_0004NI_0002 CGP 2:125084628-125147839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267836 MYEF2-003 protein_coding Homo_sapiens 0 1760
ENST00000324324 MYEF2-001 protein_coding Homo_sapiens 0 2375
ENST00000557868 MYEF2-014 processed_transcript Homo_sapiens 0 403
ENST00000558289 MYEF2-005 retained_intron Homo_sapiens 0 507
ENST00000558395 MYEF2-009 protein_coding Homo_sapiens 0 636
ENST00000559057 MYEF2-013 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000559862 MYEF2-007 processed_transcript Homo_sapiens 0 237
ENST00000560157 MYEF2-008 processed_transcript Homo_sapiens 4e-34 148
ENST00000560172 MYEF2-012 protein_coding Homo_sapiens 0 473
ENST00000560513 MYEF2-011 retained_intron Homo_sapiens 0 481
ENST00000560530 MYEF2-004 retained_intron Homo_sapiens 0 507
ENST00000561151 MYEF2-006 nonsense_mediated_decay Homo_sapiens 6e-34 148
ENST00000561301 MYEF2-010 retained_intron Homo_sapiens 0 634
ENST00000561351 MYEF2-002 nonsense_mediated_decay Homo_sapiens 0 933
ENST00000610570 MYEF2-201 protein_coding Homo_sapiens 0 920
ENST00000616409 MYEF2-202 protein_coding Homo_sapiens 0 2246
ENST00000620867 MYEF2-203 protein_coding Homo_sapiens 0 507

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