C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137872-ENSG00000188467 CGP 9606 15:47184101-48142672
GeneTranscriptPositionBiotype
ENSG00000104177 (MYEF2)
myelin expression factor 2 		ENST00000267836 (MYEF2-003) 48141797-48178353 protein_coding
ENST00000324324 (MYEF2-001) 48134631-48178517 protein_coding
ENST00000557868 (MYEF2-014) 48157136-48158920 processed_transcript
ENST00000558289 (MYEF2-005) 48139432-48149986 retained_intron
ENST00000558395 (MYEF2-009) 48143061-48159670 protein_coding
ENST00000559057 (MYEF2-013) 48142666-48149313 retained_intron
ENST00000559862 (MYEF2-007) 48159596-48178291 processed_transcript
ENST00000560157 (MYEF2-008) 48162695-48169910 processed_transcript
ENST00000560172 (MYEF2-012) 48141798-48149326 protein_coding
ENST00000560513 (MYEF2-011) 48149197-48154076 retained_intron
ENST00000560530 (MYEF2-004) 48141796-48152274 retained_intron
ENST00000561151 (MYEF2-006) 48162719-48178326 nonsense_mediated_decay
ENST00000561301 (MYEF2-010) 48152117-48158921 retained_intron
ENST00000561351 (MYEF2-002) 48152307-48178316 nonsense_mediated_decay
ENST00000610570 (MYEF2-201) 48152308-48178316 protein_coding
ENST00000616409 (MYEF2-202) 48142652-48178144 protein_coding
ENST00000620867 (MYEF2-203) 48141806-48152280 protein_coding
ENSG00000137872 (SEMA6D)
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D 		ENST00000316364 (SEMA6D-004) 47718489-47774223 protein_coding
ENST00000354744 (SEMA6D-005) 47718489-47774223 protein_coding
ENST00000355997 (SEMA6D-201) 47718489-47774222 protein_coding
ENST00000358066 (SEMA6D-006) 47718489-47774223 protein_coding
ENST00000389425 (SEMA6D-003) 47718461-47765480 protein_coding
ENST00000389428 (SEMA6D-007) 47718489-47774223 protein_coding
ENST00000536845 (SEMA6D-002) 47717363-47771933 protein_coding
ENST00000537942 (SEMA6D-202) 47412390-47774220 protein_coding
ENST00000558014 (SEMA6D-001) 47184101-47774221 protein_coding
ENST00000558431 (SEMA6D-014) 47765822-47767303 retained_intron
ENST00000558816 (SEMA6D-008) 47717457-47772882 protein_coding
ENST00000559064 (SEMA6D-015) 47766577-47767515 protein_coding
ENST00000559184 (SEMA6D-009) 47185663-47759864 protein_coding
ENST00000559196 (SEMA6D-013) 47759723-47762319 protein_coding
ENST00000560006 (SEMA6D-016) 47766580-47770765 protein_coding
ENST00000560636 (SEMA6D-010) 47339067-47759802 protein_coding
ENST00000561106 (SEMA6D-011) 47717402-47759983 retained_intron
ENST00000561133 (SEMA6D-012) 47716998-47761428 protein_coding
ENSG00000213862 (CTD-2270N23.1)
 ENST00000497325 (CTD-2270N23.1-001) 47730144-47730935 processed_pseudogene
ENSG00000221202 (AC012050.1)
 ENST00000408275 (AC012050.1-201) 47552475-47552571 miRNA
ENSG00000222343 (RN7SKP139)
RNA, 7SK small nuclear pseudogene 139 		ENST00000410411 (RN7SKP139-201) 47272597-47272889 misc_RNA
ENSG00000259221 (CTD-2050N2.1)
 ENST00000557882 (CTD-2050N2.1-002) 47360000-47396605 antisense
ENST00000559799 (CTD-2050N2.1-001) 47359430-47396732 antisense
ENST00000560180 (CTD-2050N2.1-003) 47360005-47396591 antisense
ENSG00000259360 (RP11-142J21.1)
 ENST00000561174 (RP11-142J21.1-001) 47397501-47399554 antisense
ENSG00000259554 (RP11-408J6.1)
 ENST00000561254 (RP11-408J6.1-001) 47274183-47275164 sense_intronic
ENSG00000259572 (LINC01491)
long intergenic non-protein coding RNA 1491 		ENST00000558434 (LINC01491-003) 47819628-47844956 lincRNA
ENST00000558792 (LINC01491-001) 47803384-47846236 lincRNA
ENST00000561238 (LINC01491-002) 47814002-47846215 lincRNA
ENSG00000259588 (RP11-552E10.1)
 ENST00000558185 (RP11-552E10.1-001) 47603880-47606352 antisense
ENSG00000259730 (CTD-2007H18.1)
 ENST00000558370 (CTD-2007H18.1-001) 47944044-47949509 lincRNA
ENSG00000259740 (RP11-142J21.2)
 ENST00000558258 (RP11-142J21.2-001) 47525169-47527756 sense_intronic
ENSG00000259754 (RP11-208K4.1)
 ENST00000560900 (RP11-208K4.1-001) 47884310-48049112 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
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Genes
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Structures from Ensembl
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CIL_0004NB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027200-ENSMUSG00000035183 CGP 10090 2:124089969-125088677
GeneTranscriptPositionBiotype
ENSMUSG00000027201 (Myef2)
myelin basic protein expression factor 2, repressor 		ENSMUST00000067780 (Myef2-201) 125087742-125123660 protein_coding
ENSMUST00000089825 (Myef2-002) 125088834-125116873 protein_coding
ENSMUST00000110501 (Myef2-008) 125086271-125123595 nonsense_mediated_decay
ENSMUST00000129945 (Myef2-007) 125084628-125089011 processed_transcript
ENSMUST00000137091 (Myef2-004) 125095708-125123414 protein_coding
ENSMUST00000142718 (Myef2-005) 125087741-125123623 protein_coding
ENSMUST00000147105 (Myef2-003) 125087742-125123661 protein_coding
ENSMUST00000149911 (Myef2-009) 125099635-125123575 retained_intron
ENSMUST00000152367 (Myef2-001) 125086568-125123626 protein_coding
ENSMUSG00000035183 (Slc24a5)
solute carrier family 24, member 5 		ENSMUST00000070353 (Slc24a5-001) 125068124-125088677 protein_coding
ENSMUST00000139615 (Slc24a5-002) 125069244-125083226 processed_transcript
ENSMUST00000149963 (Slc24a5-003) 125080355-125083079 retained_intron
ENSMUSG00000085496 (4930517E11Rik)
RIKEN cDNA 4930517E11 gene 		ENSMUST00000129584 (4930517E11Rik-001) 124123636-124129956 lincRNA
ENSMUSG00000086954 (4930583P06Rik)
RIKEN cDNA 4930583P06 gene 		ENSMUST00000136658 (4930583P06Rik-001) 124217679-124222331 lincRNA
ENSMUSG00000087450 (Gm13994)
predicted gene 13994 		ENSMUST00000137397 (Gm13994-001) 124708655-124711083 lincRNA

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NB_0001ENSG00000104177ENST00000267836ENST00000324324ENST00000558289ENST00000558395ENST00000559862ENST00000560157ENST00000560172ENST00000560530ENST00000616409ENST00000620867ENSG00000137872ENST00000316364ENST00000354744ENST00000358066ENST00000389425ENST00000389428ENST00000536845ENST00000537942ENST00000558014ENST00000558816ENST00000559064ENSG00000213862ENST00000497325ENSG00000221202ENST00000408275ENSG00000222343ENST00000410411ENSG00000259221ENST00000557882ENST00000559799ENSG00000259360ENST00000561174ENSG00000259554ENST00000561254ENSG00000259572ENST00000558434ENST00000558792ENST00000561238ENSG00000259588ENST00000558185ENSG00000259730ENST00000558370ENSG00000259740ENST00000558258ENSG00000259754ENST00000560900CIL_0004NB_0002ENSMUSG00000027201ENSMUST00000067780ENSMUST00000089825ENSMUST00000129945ENSMUST00000142718ENSMUST00000147105ENSMUST00000152367ENSMUSG00000035183ENSMUST00000070353ENSMUSG00000085496ENSMUST00000129584ENSMUSG00000086954ENSMUST00000136658ENSMUSG00000087450ENSMUST00000137397
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104177 ENST00000267836 1.259±0.00 0.908±0.00 N/A 3.134±0.90 0.581±0.05 1.256±0.00 0.997±0.00 2.242±0.00 N/A N/A N/A 0.374±0.20 0.291±0.07 7.153±3.36
ENST00000324324 N/A N/A N/A 1.088±0.00 N/A 0.244±0.03 0.157±0.02 0.709±0.00 0.273±0.00 N/A 0.017±0.00 0.073±0.02 N/A N/A
ENST00000557868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558289 0.519±0.00 0.390±0.00 N/A N/A 0.295±0.00 0.931±0.06 0.415±0.00 0.937±0.88 0.358±0.34 0.784±0.00 N/A 0.308±0.02 0.108±0.00 1.328±0.00
ENST00000558395 N/A N/A N/A 17.714±0.00 1.750±0.00 3.338±0.00 N/A 0.444±0.00 0.042±0.00 N/A 0.247±0.00 1.447±1.37 N/A 27.720±0.00
ENST00000559057 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.433±1.05 N/A
ENST00000560157 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.366±0.00 N/A
ENST00000560172 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.357±0.00 N/A
ENST00000560513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560530 N/A N/A 3.090±0.00 N/A N/A N/A N/A 2.297±0.00 1.403±0.00 1.142±0.14 N/A 0.498±0.23 N/A N/A
ENST00000561151 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561351 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000610570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616409 1.447±0.00 1.000±0.00 N/A 6.786±0.00 N/A N/A 0.891±0.00 2.910±0.00 N/A N/A N/A 0.633±0.40 0.106±0.00 14.532±8.73
ENST00000620867 N/A N/A N/A N/A 0.978±0.00 N/A N/A N/A 0.016±0.00 N/A 0.199±0.00 N/A 0.138±0.00 N/A
ENSG00000137872 ENST00000316364 0.160±0.00 N/A N/A N/A 0.239±0.00 N/A 0.164±0.00 0.212±0.00 N/A N/A 0.315±0.00 2.260±1.67 1.607±0.89 0.180±0.00
ENST00000354744 0.769±0.00 N/A N/A 3.335±0.00 N/A 0.266±0.00 0.501±0.00 0.904±0.00 N/A 0.308±0.00 N/A N/A 1.607±0.00 0.540±0.00
ENST00000355997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000358066 N/A N/A N/A N/A N/A 0.176±0.00 N/A N/A N/A 1.119±0.00 N/A N/A N/A N/A
ENST00000389425 N/A N/A 2.006±0.00 N/A N/A N/A 0.531±0.00 N/A N/A 1.353±0.00 N/A N/A N/A N/A
ENST00000389428 N/A N/A 0.899±0.00 1.422±0.00 0.713±0.00 0.826±0.00 N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A
ENST00000536845 N/A N/A 1.319±0.00 4.793±0.00 0.619±0.00 1.271±0.00 0.829±0.00 N/A 0.670±0.00 1.101±0.69 0.812±0.00 0.966±0.00 N/A N/A
ENST00000537942 N/A N/A N/A 0.870±0.00 N/A 0.212±0.00 N/A N/A 0.232±0.00 N/A N/A 1.787±0.00 1.066±0.00 N/A
ENST00000558014 N/A 0.300±0.00 N/A 0.875±0.00 0.299±0.00 0.168±0.00 N/A N/A 0.244±0.00 N/A N/A N/A N/A 0.271±0.00
ENST00000558431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558816 N/A N/A N/A N/A 0.717±0.00 2.130±0.00 N/A 0.932±0.00 N/A 0.445±0.00 N/A N/A N/A N/A
ENST00000559064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.777±0.00 N/A N/A N/A
ENST00000559184 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559196 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561133 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213862 ENST00000497325 0.302±0.00 0.164±0.00 0.061±0.00 0.134±0.00 0.089±0.00 0.089±0.01 0.026±0.00 0.116±0.00 0.154±0.00 0.173±0.00 0.170±0.00 0.235±0.07 0.105±0.05 0.171±0.05
ENSG00000221202 ENST00000408275 N/A N/A N/A 0.186±0.00 N/A 0.170±0.00 N/A 0.717±0.00 0.365±0.00 N/A N/A N/A N/A N/A
ENSG00000222343 ENST00000410411 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.523±0.00
ENSG00000259221 ENST00000557882 N/A 0.196±0.00 N/A 0.130±0.00 0.418±0.00 0.160±0.00 0.089±0.00 0.173±0.00 0.184±0.00 0.133±0.00 N/A N/A N/A 0.092±0.03
ENST00000559799 0.124±0.00 N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 0.096±0.05 N/A
ENST00000560180 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259360 ENST00000561174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00
ENSG00000259554 ENST00000561254 N/A N/A N/A 0.079±0.00 0.086±0.00 N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A 0.271±0.16
ENSG00000259572 ENST00000558434 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.181±0.00
ENST00000558792 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.608±0.00
ENST00000561238 N/A N/A N/A N/A N/A 0.162±0.00 N/A N/A N/A N/A N/A N/A N/A 1.256±0.44
ENSG00000259588 ENST00000558185 N/A N/A N/A 0.280±0.00 N/A N/A N/A N/A 0.169±0.00 N/A N/A N/A 0.136±0.00 0.062±0.00
ENSG00000259730 ENST00000558370 N/A N/A N/A N/A N/A N/A N/A 0.229±0.00 N/A N/A N/A N/A N/A 0.193±0.14
ENSG00000259740 ENST00000558258 N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A N/A N/A 0.127±0.00 0.073±0.00 0.089±0.00
ENSG00000259754 ENST00000560900 N/A N/A 0.104±0.00 N/A N/A N/A N/A 0.387±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027201 ENSMUST00000067780 1.195±0.00 N/A 3.974±0.75 37.835±0.41 1.255±0.00 1.022±0.29 1.260±0.10 1.548±0.10 4.063±1.99 2.656±0.00 0.535±0.15 6.003±0.62 2.422±1.08 12.519±0.49
ENSMUST00000089825 N/A N/A N/A 45.123±0.00 N/A N/A 0.606±0.00 N/A 9.089±4.32 N/A N/A 24.827±16.24 6.540±3.90 25.369±27.60
ENSMUST00000110501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129945 1.257±0.00 N/A N/A 10.664±0.00 N/A N/A N/A 0.457±0.00 2.541±1.57 N/A 0.181±0.04 2.416±0.21 N/A N/A
ENSMUST00000137091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142718 1.943±0.58 5.099±1.82 2.847±0.11 21.250±10.21 1.860±1.08 2.045±1.21 0.684±0.04 1.374±0.57 2.938±2.42 5.228±0.00 0.311±0.09 5.739±3.11 4.263±1.92 5.515±0.00
ENSMUST00000147105 2.732±1.55 3.733±0.00 N/A N/A 3.831±1.44 2.145±0.15 N/A 1.304±0.42 4.301±3.20 4.480±1.41 0.165±0.00 7.171±3.86 N/A 3.298±0.00
ENSMUST00000149911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152367 2.511±0.00 12.027±5.51 N/A N/A 3.211±0.88 2.542±0.84 N/A 0.742±0.00 0.955±0.46 4.317±1.25 N/A 13.027±7.62 N/A N/A
ENSMUSG00000035183 ENSMUST00000070353 N/A N/A N/A N/A N/A 0.848±0.00 0.454±0.00 N/A N/A N/A N/A 2.238±0.00 N/A N/A
ENSMUST00000139615 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149963 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085496 ENSMUST00000129584 N/A N/A 0.008±0.00 0.068±0.05 N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A 0.008±0.00 N/A
ENSMUSG00000086954 ENSMUST00000136658 N/A N/A 0.012±0.00 0.308±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.713±1.99
ENSMUSG00000087450 ENSMUST00000137397 N/A N/A N/A 0.046±0.00 0.537±0.20 N/A N/A 0.178±0.05 0.802±0.37 N/A 0.098±0.00 0.099±0.00 0.056±0.03 0.486±0.28

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