C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myelin basic protein expression factor 2, repressor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067780 Myef2-201 ENSMUSG00000027201 10090 - 2:125087742-125123660 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067780
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067780 1.195±0.00 3.974±0.75 37.835±0.41 1.255±0.00 1.022±0.29 1.260±0.10 1.548±0.10 4.063±1.99 2.656±0.00 0.535±0.15 6.003±0.62 2.422±1.08 12.519±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NB CIL_0004NB_0002 CGP 2:124089969-125088677
CIL_0004QO CIL_0004QO_0003 CGP 2:125068124-125123661
CIL_0004NI CIL_0004NI_0002 CGP 2:125084628-125147839

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267836 MYEF2-003 protein_coding Homo_sapiens 0 1426
ENST00000324324 MYEF2-001 protein_coding Homo_sapiens 0 1439
ENST00000341459 SLC24A5-001 protein_coding Homo_sapiens 0 425
ENST00000449382 SLC24A5-004 protein_coding Homo_sapiens 0 388
ENST00000557868 MYEF2-014 processed_transcript Homo_sapiens 0 403
ENST00000558289 MYEF2-005 retained_intron Homo_sapiens 0 662
ENST00000558395 MYEF2-009 protein_coding Homo_sapiens 0 883
ENST00000559057 MYEF2-013 retained_intron Homo_sapiens 9.80909e-45 183
ENST00000559862 MYEF2-007 processed_transcript Homo_sapiens 0 237
ENST00000560157 MYEF2-008 processed_transcript Homo_sapiens 4e-34 148
ENST00000560172 MYEF2-012 protein_coding Homo_sapiens 0 475
ENST00000560513 MYEF2-011 retained_intron Homo_sapiens 0 255
ENST00000560530 MYEF2-004 retained_intron Homo_sapiens 0 662
ENST00000561151 MYEF2-006 nonsense_mediated_decay Homo_sapiens 6e-34 148
ENST00000561301 MYEF2-010 retained_intron Homo_sapiens 0 551
ENST00000561351 MYEF2-002 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000610570 MYEF2-201 protein_coding Homo_sapiens 0 918
ENST00000616409 MYEF2-202 protein_coding Homo_sapiens 0 1299
ENST00000620867 MYEF2-203 protein_coding Homo_sapiens 0 662

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