C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIKEN cDNA 1700037H04 gene
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027327 1700037H04Rik 10090 - 2:131146324-131160081 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028800 1700037H04Rik-002 131146804-131160081 protein_coding
  ENSMUST00000103188 1700037H04Rik-001 131146325-131160020 protein_coding
  ENSMUST00000133602 1700037H04Rik-005 131147161-131160042 protein_coding
  ENSMUST00000136838 1700037H04Rik-004 131146325-131149028 retained_intron
  ENSMUST00000152961 1700037H04Rik-007 131148281-131160042 processed_transcript
  ENSMUST00000184121 1700037H04Rik-006 131146794-131160024 nonsense_mediated_decay
  ENSMUST00000184535 1700037H04Rik-003 131146324-131160034 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028800ENSMUST00000103188ENSMUST00000133602ENSMUST00000136838ENSMUST00000184535
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028800 N/A N/A N/A N/A 56.254±0.00 10.953±1.44 3.891±0.91 N/A 2.150±0.36 N/A 0.440±0.00 18.603±2.98 N/A 98.132±10.82
ENSMUST00000103188 116.857±33.10 86.829±34.61 21.396±0.89 46.613±8.09 122.160±34.30 25.319±3.67 10.384±3.74 39.526±0.89 43.948±45.67 17.236±1.60 1.977±1.29 37.174±11.27 22.344±5.28 231.082±112.32
ENSMUST00000133602 N/A N/A N/A N/A 35.372±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136838 N/A 20.524±7.09 3.115±0.09 1.921±0.00 19.976±0.00 N/A 1.797±0.67 N/A 0.687±0.00 4.005±0.27 0.727±0.15 3.383±0.36 3.139±0.86 1.522±0.00
ENSMUST00000184535 N/A N/A N/A N/A 29.251±5.57 9.960±1.86 N/A N/A 1.023±0.27 4.909±1.40 N/A 11.507±2.52 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033D CIL_00033D_0002 CGP 2:131146324-131187282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076239 C7H20orf27 (1 of 2) chromosome 20 open reading frame 27 protein_coding Danio_rerio
ENSDARG00000087426 C1H20orf27 (2 of 2) chromosome 20 open reading frame 27 protein_coding Danio_rerio
ENSG00000101220 C20orf27 chromosome 20 open reading frame 27 protein_coding Homo_sapiens

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