C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ubiquitin specific peptidase 8
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027363 Usp8 10090 + 2:126707328-126759297 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028841 Usp8-001 126707343-126759297 protein_coding
  ENSMUST00000110416 Usp8-002 126707360-126759290 protein_coding
  ENSMUST00000138859 Usp8-003 126707328-126759248 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028841ENSMUST00000110416ENSMUST00000138859
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028841 6.632±2.72 4.792±1.56 16.248±0.97 14.690±6.42 4.382±1.23 4.298±1.24 3.253±0.96 9.640±0.95 7.661±3.21 9.024±0.98 4.805±0.31 20.506±14.63 15.764±4.54 56.780±34.53
ENSMUST00000110416 N/A N/A N/A N/A 5.000±0.73 2.841±1.03 1.232±0.00 N/A N/A N/A N/A 3.351±0.95 N/A N/A
ENSMUST00000138859 8.416±1.80 11.986±2.09 N/A 3.400±0.37 6.164±1.50 5.255±0.55 2.695±0.52 9.889±1.37 4.368±1.70 10.559±2.48 N/A 12.922±3.11 2.533±0.90 8.477±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297
CIL_0002E8 CIL_0002E8_0002 CGP 2:126707328-126783458

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000281 IEA mitotic cytokinesis
GO:0001669 IDA acrosomal vesicle
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005769 IEA early endosome
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007032 IMP endosome organization
GO:0007049 IEA cell cycle
GO:0007265 IPI Ras protein signal transduction
GO:0016579 IMP protein deubiquitination
GO:0017124 IEA SH3 domain binding
GO:0019897 IEA extrinsic component of plasma membrane
GO:0030496 IDA midbody
GO:0031313 IDA extrinsic component of endosome membrane
GO:0070536 IEA protein K63-linked deubiquitination
GO:0071108 IEA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000063719 usp8 ubiquitin specific peptidase 8 protein_coding Danio_rerio
ENSG00000138592 USP8 ubiquitin specific peptidase 8 protein_coding Homo_sapiens

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