C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028841 Usp8-001 ENSMUSG00000027363 10090 + 2:126707343-126759297 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028841 6.632±2.72 4.792±1.56 16.248±0.97 14.690±6.42 4.382±1.23 4.298±1.24 3.253±0.96 9.640±0.95 7.661±3.21 9.024±0.98 4.805±0.31 20.506±14.63 15.764±4.54 56.780±34.53

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297
CIL_0002E8 CIL_0002E8_0002 CGP 2:126707328-126783458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001669 IDA acrosomal vesicle
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IEA nucleus
GO:0005829 IDA cytosol
GO:0005886 IEA plasma membrane
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007032 IMP endosome organization
GO:0007049 IEA cell cycle
GO:0007265 IPI Ras protein signal transduction
GO:0016579 IMP protein deubiquitination
GO:0017124 IEA SH3 domain binding
GO:0030496 IDA midbody
GO:0031313 IDA extrinsic component of endosome membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307179 USP8-003 protein_coding Homo_sapiens 0 1698
ENST00000396444 USP8-001 protein_coding Homo_sapiens 0 1698
ENST00000413336 AC105402.3-001 processed_pseudogene Homo_sapiens 2e-33 147
ENST00000415606 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000419830 USP8-007 retained_intron Homo_sapiens 0 1042
ENST00000425032 USP8-002 protein_coding Homo_sapiens 0 2719
ENST00000430926 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000438377 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000445362 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000454254 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000484424 USP8P1-001 processed_pseudogene Homo_sapiens 0 1369
ENST00000494673 USP8P1-001 processed_pseudogene Homo_sapiens 0 1408
ENST00000558091 USP8-017 protein_coding Homo_sapiens 0 527
ENST00000558892 USP8-018 processed_transcript Homo_sapiens 0 353
ENST00000559242 USP8-013 nonsense_mediated_decay Homo_sapiens 4e-38 161
ENST00000559329 USP8-004 non_stop_decay Homo_sapiens 0 1382
ENST00000560297 USP8-008 protein_coding Homo_sapiens 0 407
ENST00000560379 USP8-016 retained_intron Homo_sapiens 0 390
ENST00000560527 USP8-014 processed_transcript Homo_sapiens 0 425
ENST00000560730 USP8-005 nonsense_mediated_decay Homo_sapiens 0 821
ENST00000560954 USP8-009 processed_transcript Homo_sapiens 0 396
ENST00000560982 USP8-011 protein_coding Homo_sapiens 0 303
ENST00000561211 USP8-012 nonsense_mediated_decay Homo_sapiens 6e-38 161
ENST00000561330 USP8-006 nonsense_mediated_decay Homo_sapiens 0 468

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