C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110416 Usp8-002 ENSMUSG00000027363 10090 + 2:126707360-126759290 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartOvaryENSMUST00000110416
Transcript ID Breast Colon Heart Ovary
ENSMUST00000110416 5.000±0.73 2.841±1.03 1.232±0.00 3.351±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070V CIL_00070V_0002 CGP 2:126627442-126759297
CIL_0002E8 CIL_0002E8_0002 CGP 2:126707328-126783458

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 IEA mitotic cytokinesis
GO:0001669 IDA acrosomal vesicle
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007032 IEA endosome organization
GO:0007265 IPI Ras protein signal transduction
GO:0016579 IDA protein deubiquitination
GO:0019897 IEA extrinsic component of plasma membrane
GO:0030496 IDA midbody
GO:0070536 IEA protein K63-linked deubiquitination
GO:0071108 IEA protein K48-linked deubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307179 USP8-003 protein_coding Homo_sapiens 0 1698
ENST00000396444 USP8-001 protein_coding Homo_sapiens 0 1698
ENST00000413336 AC105402.3-001 processed_pseudogene Homo_sapiens 2e-33 147
ENST00000415606 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000419830 USP8-007 retained_intron Homo_sapiens 0 1042
ENST00000425032 USP8-002 protein_coding Homo_sapiens 0 2719
ENST00000430926 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000438377 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000445362 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000454254 USP8P1-001 processed_pseudogene Homo_sapiens 0 1380
ENST00000484424 USP8P1-001 processed_pseudogene Homo_sapiens 0 1369
ENST00000494673 USP8P1-001 processed_pseudogene Homo_sapiens 0 1408
ENST00000558091 USP8-017 protein_coding Homo_sapiens 0 374
ENST00000558892 USP8-018 processed_transcript Homo_sapiens 0 200
ENST00000559242 USP8-013 nonsense_mediated_decay Homo_sapiens 4e-38 161
ENST00000559329 USP8-004 non_stop_decay Homo_sapiens 0 1229
ENST00000560297 USP8-008 protein_coding Homo_sapiens 0 254
ENST00000560379 USP8-016 retained_intron Homo_sapiens 0 390
ENST00000560527 USP8-014 processed_transcript Homo_sapiens 0 425
ENST00000560730 USP8-005 nonsense_mediated_decay Homo_sapiens 0 821
ENST00000560954 USP8-009 processed_transcript Homo_sapiens 0 204
ENST00000560982 USP8-011 protein_coding Homo_sapiens 4e-38 161
ENST00000561211 USP8-012 nonsense_mediated_decay Homo_sapiens 6e-38 161
ENST00000561330 USP8-006 nonsense_mediated_decay Homo_sapiens 0 315

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