C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: isocitrate dehydrogenase 3 (NAD+) beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027406 Idh3b 10090 - 2:130279309-130284547 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028892 Idh3b-001 130279309-130284547 protein_coding
  ENSMUST00000124868 Idh3b-003 130283663-130284415 retained_intron
  ENSMUST00000149843 Idh3b-002 130282145-130284434 retained_intron
  ENSMUST00000184538 Idh3b-004 130279313-130280551 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028892 168.002±25.58 139.810±44.69 109.120±21.23 93.303±14.06 160.176±63.02 109.528±19.48 200.227±112.49 243.122±12.44 128.657±19.80 62.510±8.55 179.941±14.72 89.900±17.99 79.963±21.22 65.809±14.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313
CIL_0000FV CIL_0000FV_0002 CGP 2:130274430-130284547
CIL_0000FY CIL_0000FY_0002 CGP 2:130279309-130370481

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006102 IEA isocitrate metabolic process
GO:0006103 IEA 2-oxoglutarate metabolic process
GO:0006734 IEA NADH metabolic process
GO:0051287 IEA NAD binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044753 idh3b isocitrate dehydrogenase 3 (NAD+) beta protein_coding Danio_rerio
ENSG00000101365 IDH3B isocitrate dehydrogenase 3 (NAD+) beta protein_coding Homo_sapiens

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