C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: isocitrate dehydrogenase 3 (NAD+) beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028892 Idh3b-001 ENSMUSG00000027406 10090 - 2:130279309-130284547 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028892 168.002±25.58 139.810±44.69 109.120±21.23 93.303±14.06 160.176±63.02 109.528±19.48 200.227±112.49 243.122±12.44 128.657±19.80 62.510±8.55 179.941±14.72 89.900±17.99 79.963±21.22 65.809±14.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SG CIL_0007SG_0002 VISTA 2:130051805-130652389
CIL_0000FW CIL_0000FW_0002 CGP 2:130195194-130279313
CIL_0000FV CIL_0000FV_0002 CGP 2:130274430-130284547
CIL_0000FY CIL_0000FY_0002 CGP 2:130279309-130370481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0006102 IEA isocitrate metabolic process
GO:0006103 IEA 2-oxoglutarate metabolic process
GO:0006734 IEA NADH metabolic process
GO:0051287 IEA NAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000380843 IDH3B-011 protein_coding Homo_sapiens 0 1485
ENST00000380851 IDH3B-010 protein_coding Homo_sapiens 0 1382
ENST00000462967 IDH3B-008 retained_intron Homo_sapiens 0 634
ENST00000466494 IDH3B-004 processed_transcript Homo_sapiens 0 623
ENST00000466999 IDH3B-009 processed_transcript Homo_sapiens 0 239
ENST00000474315 IDH3B-001 protein_coding Homo_sapiens 0 1448
ENST00000477689 IDH3B-003 processed_transcript Homo_sapiens 0 353
ENST00000479376 IDH3B-005 processed_transcript Homo_sapiens 0 353
ENST00000488299 IDH3B-012 retained_intron Homo_sapiens 0 848
ENST00000491065 IDH3B-002 retained_intron Homo_sapiens 0 427
ENST00000492240 IDH3B-007 retained_intron Homo_sapiens 0 353
ENST00000613370 IDH3B-201 protein_coding Homo_sapiens 0 1367

Loading