C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0000FV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101361-ENSG00000101365 CGP 9606 20:2652145-2664219
GeneTranscriptPositionBiotype
ENSG00000101361 (NOP56)
NOP56 ribonucleoprotein
ENST00000329276 (NOP56-009) 2652145-2658393 protein_coding
ENST00000415272 (NOP56-010) 2655616-2658359 protein_coding
ENST00000445139 (NOP56-016) 2652649-2655512 protein_coding
ENST00000460258 (NOP56-015) 2653001-2655512 processed_transcript
ENST00000462630 (NOP56-005) 2656640-2658393 processed_transcript
ENST00000466447 (NOP56-006) 2656111-2658393 processed_transcript
ENST00000467196 (NOP56-007) 2655436-2658393 nonsense_mediated_decay
ENST00000467857 (NOP56-008) 2656949-2658393 processed_transcript
ENST00000469588 (NOP56-002) 2652646-2655512 processed_transcript
ENST00000470143 (NOP56-014) 2652633-2653820 processed_transcript
ENST00000471023 (NOP56-018) 2656410-2657225 processed_transcript
ENST00000480447 (NOP56-004) 2656159-2657218 processed_transcript
ENST00000480992 (NOP56-003) 2654789-2656549 processed_transcript
ENST00000484998 (NOP56-017) 2655097-2656549 processed_transcript
ENST00000490753 (NOP56-001) 2656401-2657449 processed_transcript
ENST00000492135 (NOP56-011) 2655946-2658393 processed_transcript
ENST00000494697 (NOP56-012) 2652632-2655512 processed_transcript
ENST00000496775 (NOP56-013) 2654234-2655512 processed_transcript
ENST00000612233 (NOP56-019) 2655413-2658392 retained_intron
ENST00000616692 (NOP56-020) 2655547-2658393 retained_intron
ENSG00000101365 (IDH3B)
isocitrate dehydrogenase 3 (NAD+) beta
ENST00000380843 (IDH3B-011) 2658395-2664219 protein_coding
ENST00000380851 (IDH3B-010) 2658395-2664219 protein_coding
ENST00000462967 (IDH3B-008) 2660296-2664215 retained_intron
ENST00000466494 (IDH3B-004) 2658395-2660308 processed_transcript
ENST00000466999 (IDH3B-009) 2659283-2659916 processed_transcript
ENST00000474315 (IDH3B-001) 2658395-2664189 protein_coding
ENST00000477689 (IDH3B-003) 2658542-2660309 processed_transcript
ENST00000479376 (IDH3B-005) 2660032-2660553 processed_transcript
ENST00000488299 (IDH3B-012) 2658395-2664188 retained_intron
ENST00000491065 (IDH3B-002) 2660505-2664209 retained_intron
ENST00000492240 (IDH3B-007) 2658395-2660359 retained_intron
ENST00000613370 (IDH3B-201) 2659015-2664219 protein_coding
CIL_0000FV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027405-ENSMUSG00000027406 CGP 10090 2:130274430-130284547
GeneTranscriptPositionBiotype
ENSMUSG00000027406 (Idh3b)
isocitrate dehydrogenase 3 (NAD+) beta
ENSMUST00000028892 (Idh3b-001) 130279309-130284547 protein_coding
ENSMUST00000124868 (Idh3b-003) 130283663-130284415 retained_intron
ENSMUST00000149843 (Idh3b-002) 130282145-130284434 retained_intron
ENSMUST00000184538 (Idh3b-004) 130279313-130280551 nonsense_mediated_decay

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FV_0001ENSG00000101361ENST00000329276ENST00000415272ENST00000445139ENST00000460258ENST00000462630ENST00000466447ENST00000467196ENST00000467857ENST00000469588ENST00000470143ENST00000471023ENST00000480447ENST00000480992ENST00000484998ENST00000490753ENST00000492135ENST00000494697ENST00000496775ENST00000612233ENST00000616692ENSG00000101365ENST00000380843ENST00000380851ENST00000462967ENST00000466494ENST00000466999ENST00000474315ENST00000477689ENST00000479376ENST00000488299ENST00000491065ENST00000492240ENST00000613370CIL_0000FV_0002ENSMUSG00000027406ENSMUST00000028892ENSMUST00000124868ENSMUST00000149843ENSMUST00000184538
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000FV_0001ENSG00000101361ENST00000329276ENST00000415272ENST00000462630ENST00000466447ENST00000467196ENST00000467857ENST00000469588ENST00000480447ENST00000480992ENST00000490753ENST00000492135ENST00000496775ENSG00000101365ENST00000380843ENST00000380851ENST00000462967ENST00000466494ENST00000474315ENST00000477689ENST00000491065ENST00000613370CIL_0000FV_0002ENSMUSG00000027406ENSMUST00000028892
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101361 ENST00000329276 18.929±0.00 34.755±0.00 2.445±0.00 20.981±9.95 14.103±5.89 14.941±8.76 4.265±2.96 22.500±0.00 9.792±4.05 6.588±3.72 28.545±0.00 25.531±22.34 20.523±11.88 37.590±0.00
ENST00000415272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.903±0.00 11.586±0.00 N/A N/A
ENST00000445139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462630 N/A 46.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 46.037±0.00 N/A N/A
ENST00000466447 N/A N/A N/A N/A N/A N/A N/A 1.272±0.00 N/A N/A N/A N/A N/A N/A
ENST00000467196 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.915±0.00 N/A N/A N/A N/A
ENST00000467857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.551±0.00 N/A N/A N/A
ENST00000469588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.463±0.00 22.521±0.00
ENST00000470143 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 88.939±0.00 23.156±0.00 30.190±0.00
ENST00000480992 N/A N/A N/A N/A N/A N/A 5.453±0.00 4.038±0.00 N/A N/A N/A N/A N/A N/A
ENST00000484998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490753 N/A N/A N/A N/A N/A N/A N/A 8.053±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492135 N/A N/A N/A N/A 8.177±0.00 N/A N/A N/A N/A N/A N/A 15.065±0.00 N/A N/A
ENST00000494697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496775 N/A N/A N/A N/A N/A 12.015±0.00 3.304±0.00 5.602±0.00 11.480±0.00 5.482±0.00 9.345±0.00 N/A N/A N/A
ENST00000612233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616692 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101365 ENST00000380843 19.653±0.00 25.565±0.00 2.359±0.00 19.759±5.49 10.722±8.85 23.635±0.00 13.319±0.00 19.650±12.76 7.993±4.15 34.999±0.00 10.818±5.92 27.101±15.08 29.165±7.12 20.017±6.90
ENST00000380851 N/A N/A 1.190±0.00 N/A N/A 3.279±0.00 36.564±18.40 N/A N/A 1.421±0.00 8.861±0.00 N/A N/A N/A
ENST00000462967 N/A N/A N/A N/A N/A 4.466±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466494 N/A N/A N/A N/A 2.908±0.00 4.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474315 16.399±0.00 19.323±0.00 2.278±0.00 12.169±8.93 11.556±8.94 7.655±5.73 N/A 9.829±8.68 4.706±1.09 5.612±0.00 16.736±0.00 10.136±2.05 8.630±3.47 11.185±3.74
ENST00000477689 N/A N/A N/A N/A N/A N/A N/A N/A 6.976±0.00 N/A N/A N/A N/A N/A
ENST00000479376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491065 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.017±0.00 N/A N/A N/A N/A
ENST00000492240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613370 N/A N/A N/A N/A 1.021±0.00 N/A N/A N/A N/A N/A 1.734±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027406 ENSMUST00000028892 168.002±25.58 139.810±44.69 109.120±21.23 93.303±14.06 160.176±63.02 109.528±19.48 200.227±112.49 243.122±12.44 128.657±19.80 62.510±8.55 179.941±14.72 89.900±17.99 79.963±21.22 65.809±14.20
ENSMUST00000124868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000184538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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