C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000089006 SNX5 9606 - 20:17941597-17968980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000377759 SNX5-019 17941597-17968720 protein_coding
  ENST00000377768 SNX5-001 17941597-17968980 protein_coding
  ENST00000419004 SNX5-012 17949098-17968511 protein_coding
  ENST00000431277 SNX5-013 17948890-17968458 protein_coding
  ENST00000463050 SNX5-014 17947148-17951537 protein_coding
  ENST00000469704 SNX5-007 17954130-17968760 processed_transcript
  ENST00000474883 SNX5-008 17951526-17968756 processed_transcript
  ENST00000475716 SNX5-010 17953996-17962192 processed_transcript
  ENST00000476648 SNX5-011 17942138-17954024 processed_transcript
  ENST00000481323 SNX5-003 17967919-17968811 protein_coding
  ENST00000483485 SNX5-005 17941597-17961995 processed_transcript
  ENST00000484809 SNX5-015 17941600-17943622 retained_intron
  ENST00000486039 SNX5-006 17968108-17968794 protein_coding
  ENST00000490175 SNX5-002 17941597-17968800 processed_transcript
  ENST00000491090 SNX5-016 17941834-17947621 processed_transcript
  ENST00000494401 SNX5-009 17950322-17956946 processed_transcript
  ENST00000606557 SNX5-018 17967688-17968774 protein_coding
  ENST00000606570 SNX5-004 17941600-17945530 retained_intron
  ENST00000606602 SNX5-017 17967688-17968785 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377759ENST00000377768ENST00000431277ENST00000463050ENST00000476648ENST00000483485ENST00000490175ENST00000606570
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377759 10.256±0.00 13.458±0.00 3.172±0.00 9.499±1.99 13.726±7.51 8.012±0.51 6.120±0.00 21.340±0.00 4.948±1.55 10.419±0.57 7.495±4.08 39.699±0.00 9.510±2.72 8.599±0.00
ENST00000377768 N/A 12.392±0.00 3.669±0.00 4.264±0.00 N/A N/A 1.287±0.00 N/A 3.171±0.00 N/A N/A 17.951±7.41 10.478±4.19 11.435±0.00
ENST00000431277 N/A N/A N/A N/A N/A N/A 8.812±0.00 N/A N/A N/A 10.284±1.73 N/A N/A N/A
ENST00000463050 N/A N/A 8.262±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476648 13.956±0.00 N/A 7.807±0.00 N/A 15.904±7.19 N/A 2.270±0.00 N/A 6.789±0.00 N/A 5.797±0.00 N/A N/A 13.078±0.00
ENST00000483485 N/A N/A N/A N/A 3.490±0.00 N/A 0.991±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490175 6.463±0.00 N/A 3.785±0.00 10.265±0.00 N/A 10.638±4.95 N/A 15.657±5.00 11.027±0.00 6.780±0.00 N/A 22.172±0.00 15.984±2.29 12.715±0.00
ENST00000606570 N/A 7.609±0.00 N/A N/A N/A N/A N/A N/A N/A 2.913±0.00 N/A 12.472±6.87 N/A 4.664±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0001 VISTA 20:17559199-18160694
CIL_0002MX CIL_0002MX_0001 CGP 20:17693672-17968980

Gene Ontology
GO IDEvidence TypeGO Description
GO:0006886 IBA intracellular protein transport
GO:0006907 IDA pinocytosis
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0031313 IDA extrinsic component of endosome membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 IDA early endosome membrane
GO:0035091 ISS:IEA phosphatidylinositol binding
GO:0070685 IDA macropinocytic cup

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020442 snx5 sorting nexin 5 protein_coding Danio_rerio
ENSMUSG00000027423 Snx5 sorting nexin 5 protein_coding Mus_musculus

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