C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002MX_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125888-ENSG00000089006 CGP 9606 20:17693672-17968980
GeneTranscriptPositionBiotype
ENSG00000089006 (SNX5)
sorting nexin 5 		ENST00000377759 (SNX5-019) 17941597-17968720 protein_coding
ENST00000377768 (SNX5-001) 17941597-17968980 protein_coding
ENST00000419004 (SNX5-012) 17949098-17968511 protein_coding
ENST00000431277 (SNX5-013) 17948890-17968458 protein_coding
ENST00000463050 (SNX5-014) 17947148-17951537 protein_coding
ENST00000469704 (SNX5-007) 17954130-17968760 processed_transcript
ENST00000474883 (SNX5-008) 17951526-17968756 processed_transcript
ENST00000475716 (SNX5-010) 17953996-17962192 processed_transcript
ENST00000476648 (SNX5-011) 17942138-17954024 processed_transcript
ENST00000481323 (SNX5-003) 17967919-17968811 protein_coding
ENST00000483485 (SNX5-005) 17941597-17961995 processed_transcript
ENST00000484809 (SNX5-015) 17941600-17943622 retained_intron
ENST00000486039 (SNX5-006) 17968108-17968794 protein_coding
ENST00000490175 (SNX5-002) 17941597-17968800 processed_transcript
ENST00000491090 (SNX5-016) 17941834-17947621 processed_transcript
ENST00000494401 (SNX5-009) 17950322-17956946 processed_transcript
ENST00000606557 (SNX5-018) 17967688-17968774 protein_coding
ENST00000606570 (SNX5-004) 17941600-17945530 retained_intron
ENST00000606602 (SNX5-017) 17967688-17968785 protein_coding
ENSG00000125888 (BANF2)
barrier to autointegration factor 2 		ENST00000246090 (BANF2-002) 17699960-17735871 protein_coding
ENST00000377805 (BANF2-001) 17699948-17735871 protein_coding
ENST00000427254 (BANF2-003) 17699942-17725151 protein_coding
ENST00000467330 (BANF2-004) 17731179-17735798 processed_transcript
ENST00000545418 (BANF2-005) 17693672-17735860 protein_coding
ENSG00000212232 (SNORD17)
small nucleolar RNA, C/D box 17 		ENST00000390930 (SNORD17-201) 17962710-17962946 snoRNA
ENSG00000233625 (RP5-905G11.3)
 ENST00000425405 (RP5-905G11.3-001) 17887363-17888160 lincRNA
CIL_0002MX_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037307-ENSMUSG00000027423 CGP 10090 2:144033059-144270906
GeneTranscriptPositionBiotype
ENSMUSG00000027423 (Snx5)
sorting nexin 5 		ENSMUST00000028909 (Snx5-003) 144250123-144270572 protein_coding
ENSMUST00000110030 (Snx5-001) 144250123-144270906 protein_coding
ENSMUST00000124389 (Snx5-008) 144254691-144255382 processed_transcript
ENSMUST00000125285 (Snx5-007) 144251116-144252677 processed_transcript
ENSMUST00000138745 (Snx5-006) 144251064-144253705 processed_transcript
ENSMUST00000153033 (Snx5-004) 144254794-144260762 processed_transcript
ENSMUST00000155509 (Snx5-002) 144269454-144270784 processed_transcript
ENSMUST00000156936 (Snx5-005) 144253725-144255403 processed_transcript
ENSMUSG00000037307 (Banf2)
barrier to autointegration factor 2 		ENSMUST00000037722 (Banf2-002) 144033059-144073979 protein_coding
ENSMUST00000110032 (Banf2-001) 144033102-144073979 protein_coding
ENSMUSG00000065725 (Gm26165)
predicted gene, 26165 		ENSMUST00000083791 (Gm26165-201) 144261589-144261726 snoRNA
ENSMUSG00000074758 (Gm5535)
predicted gene 5535 		ENSMUST00000099292 (Gm5535-001) 144173150-144189290 lincRNA
ENSMUST00000166982 (Gm5535-201) 144174315-144179086 lincRNA
ENSMUSG00000077714 (Snord17)
small nucleolar RNA, C/D box 17 		ENSMUST00000104526 (Snord17-201) 144265979-144266216 snoRNA
ENSMUSG00000082436 (Gm11688)
predicted gene 11688 		ENSMUST00000122145 (Gm11688-001) 144261234-144261541 processed_pseudogene
ENSMUSG00000082480 (Gm11687)
predicted gene 11687 		ENSMUST00000118911 (Gm11687-001) 144142488-144143373 processed_pseudogene
ENSMUSG00000085127 (4930444E06Rik)
RIKEN cDNA 4930444E06 gene 		ENSMUST00000146746 (4930444E06Rik-001) 144243241-144244849 antisense
ENSMUSG00000086384 (Banf2os)
barrier to autointegration factor 2, opposite strand 		ENSMUST00000124061 (Banf2os-001) 144059138-144068806 antisense
ENSMUST00000145504 (Banf2os-002) 144059565-144068783 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MX_0001ENSG00000089006ENST00000377759ENST00000377768ENST00000419004ENST00000431277ENST00000463050ENST00000469704ENST00000474883ENST00000475716ENST00000476648ENST00000481323ENST00000483485ENST00000484809ENST00000486039ENST00000490175ENST00000491090ENST00000494401ENST00000606557ENST00000606570ENST00000606602ENSG00000125888ENST00000246090ENST00000377805ENST00000427254ENST00000467330ENST00000545418ENSG00000212232ENST00000390930ENSG00000233625ENST00000425405CIL_0002MX_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002MX_0001ENSG00000089006ENST00000377759ENST00000377768ENST00000431277ENST00000463050ENST00000476648ENST00000483485ENST00000490175ENST00000606570ENSG00000125888ENST00000246090ENST00000377805ENST00000427254ENST00000467330ENST00000545418ENSG00000212232ENST00000390930ENSG00000233625ENST00000425405CIL_0002MX_0002ENSMUSG00000027423ENSMUST00000028909ENSMUST00000110030ENSMUSG00000037307ENSMUST00000037722ENSMUST00000110032ENSMUSG00000065725ENSMUST00000083791ENSMUSG00000074758ENSMUST00000099292ENSMUST00000166982ENSMUSG00000077714ENSMUST00000104526ENSMUSG00000082436ENSMUST00000122145ENSMUSG00000082480ENSMUST00000118911ENSMUSG00000085127ENSMUST00000146746ENSMUSG00000086384ENSMUST00000124061ENSMUST00000145504
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089006 ENST00000377759 10.256±0.00 13.458±0.00 3.172±0.00 9.499±1.99 13.726±7.51 8.012±0.51 6.120±0.00 21.340±0.00 4.948±1.55 10.419±0.57 7.495±4.08 39.699±0.00 9.510±2.72 8.599±0.00
ENST00000377768 N/A 12.392±0.00 3.669±0.00 4.264±0.00 N/A N/A 1.287±0.00 N/A 3.171±0.00 N/A N/A 17.951±7.41 10.478±4.19 11.435±0.00
ENST00000419004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431277 N/A N/A N/A N/A N/A N/A 8.812±0.00 N/A N/A N/A 10.284±1.73 N/A N/A N/A
ENST00000463050 N/A N/A 8.262±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474883 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476648 13.956±0.00 N/A 7.807±0.00 N/A 15.904±7.19 N/A 2.270±0.00 N/A 6.789±0.00 N/A 5.797±0.00 N/A N/A 13.078±0.00
ENST00000481323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483485 N/A N/A N/A N/A 3.490±0.00 N/A 0.991±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000484809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490175 6.463±0.00 N/A 3.785±0.00 10.265±0.00 N/A 10.638±4.95 N/A 15.657±5.00 11.027±0.00 6.780±0.00 N/A 22.172±0.00 15.984±2.29 12.715±0.00
ENST00000491090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000606570 N/A 7.609±0.00 N/A N/A N/A N/A N/A N/A N/A 2.913±0.00 N/A 12.472±6.87 N/A 4.664±0.00
ENST00000606602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000125888 ENST00000246090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.783±1.69
ENST00000377805 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.062±0.00
ENST00000427254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.071±0.00 N/A 5.749±0.00
ENST00000467330 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00 N/A N/A
ENST00000545418 0.103±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000212232 ENST00000390930 0.551±0.00 1.207±0.00 65.662±0.00 20.504±20.42 61.617±61.53 126.107±125.42 50.569±0.00 63.530±62.63 108.066±107.63 98.162±97.56 66.380±65.82 47.801±73.91 0.826±0.44 1.624±0.42
ENSG00000233625 ENST00000425405 N/A 0.028±0.00 0.173±0.00 N/A 0.135±0.00 N/A 0.026±0.00 N/A N/A N/A N/A 0.074±0.00 N/A 0.078±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027423 ENSMUST00000028909 19.112±4.21 40.264±7.46 15.015±4.16 13.463±3.13 27.974±5.31 22.141±3.54 10.645±1.36 20.558±3.10 12.614±4.66 18.581±4.39 20.013±2.35 30.211±10.90 36.752±18.63 4.360±0.65
ENSMUST00000110030 19.918±8.52 11.662±2.51 12.069±0.00 15.027±0.00 20.838±3.43 19.892±5.16 5.657±0.00 9.224±1.22 17.699±16.89 10.727±0.00 3.555±0.00 25.850±4.06 18.425±8.92 4.582±1.84
ENSMUST00000124389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037307 ENSMUST00000037722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A 0.296±0.00 37.646±9.81
ENSMUST00000110032 N/A N/A 0.032±0.00 N/A 0.154±0.02 N/A 0.131±0.01 N/A N/A N/A N/A N/A 1.316±1.27 61.201±21.36
ENSMUSG00000065725 ENSMUST00000083791 N/A N/A 8.029±1.04 N/A N/A N/A N/A N/A 7.702±1.13 N/A N/A 916.181±909.24 9.035±1.25 N/A
ENSMUSG00000074758 ENSMUST00000099292 0.069±0.00 0.079±0.04 0.015±0.00 0.033±0.02 0.107±0.04 0.105±0.05 0.017±0.00 N/A 0.023±0.02 0.030±0.00 0.049±0.03 0.192±0.11 0.131±0.09 0.039±0.03
ENSMUST00000166982 N/A 0.220±0.00 N/A 0.173±0.00 0.767±0.41 0.518±0.06 N/A N/A 0.118±0.07 N/A N/A 0.765±0.42 N/A 0.388±0.00
ENSMUSG00000077714 ENSMUST00000104526 19.944±18.47 21.104±11.80 0.991±0.38 1.353±0.61 27.665±5.61 25.588±4.45 11.026±4.36 25.711±6.33 23.174±20.44 21.309±4.51 0.387±0.08 21.787±11.19 11.126±11.95 14.795±6.27
ENSMUSG00000082436 ENSMUST00000122145 0.495±0.00 N/A 0.083±0.02 0.249±0.04 0.658±0.14 0.816±0.06 N/A 0.338±0.12 0.366±0.20 0.290±0.03 0.153±0.00 0.759±0.29 0.502±0.16 0.206±0.00
ENSMUSG00000082480 ENSMUST00000118911 0.652±0.55 0.277±0.09 0.189±0.07 0.765±1.00 0.753±0.56 0.787±0.27 0.222±0.04 0.240±0.05 1.552±2.94 0.461±0.10 0.197±0.08 0.430±0.30 0.440±0.25 0.293±0.15
ENSMUSG00000085127 ENSMUST00000146746 0.053±0.03 0.153±0.00 0.013±0.00 0.028±0.02 0.043±0.02 N/A N/A 0.025±0.00 0.045±0.00 0.062±0.01 0.020±0.00 0.107±0.09 0.009±0.00 0.461±0.29
ENSMUSG00000086384 ENSMUST00000124061 0.050±0.00 N/A 0.023±0.00 0.102±0.00 N/A 0.101±0.00 0.900±0.46 0.049±0.00 0.026±0.01 0.066±0.01 N/A 0.053±0.01 0.096±0.04 0.413±0.20
ENSMUST00000145504 N/A N/A N/A N/A N/A N/A 0.519±0.37 N/A 0.034±0.00 0.194±0.00 N/A N/A 0.498±0.00 0.353±0.00

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