C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC23B (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028916 Sec23b-001 ENSMUSG00000027429 10090 + 2:144556256-144590749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028916 16.022±9.85 6.451±1.41 8.716±2.91 6.223±3.14 5.484±0.62 5.978±1.52 3.024±0.48 12.662±2.39 8.489±3.60 9.742±1.26 1.095±0.47 14.428±6.91 14.596±7.06 5.237±2.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MU CIL_0002MU_0002 CGP 2:144542265-144590749
CIL_0000YA CIL_0000YA_0002 CGP 2:144556229-144595366

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 IEA ER to Golgi vesicle-mediated transport
GO:0008270 IEA zinc ion binding
GO:0012505 IEA endomembrane system
GO:0030127 IEA COPII vesicle coat
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262544 SEC23B-005 protein_coding Homo_sapiens 0 3118
ENST00000336714 SEC23B-003 protein_coding Homo_sapiens 0 3120
ENST00000377465 SEC23B-004 protein_coding Homo_sapiens 0 3121
ENST00000377475 SEC23B-002 protein_coding Homo_sapiens 0 3155
ENST00000422877 SEC23B-008 protein_coding Homo_sapiens 0 560
ENST00000450074 SEC23B-001 protein_coding Homo_sapiens 0 1330

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