C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: TPX2, microtubule-associated protein homolog (Xenopus laevis)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027469 Tpx2 10090 + 2:152847964-152895321 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028969 Tpx2-001 152847995-152894654 protein_coding
  ENSMUST00000109816 Tpx2-002 152847978-152894654 protein_coding
  ENSMUST00000136407 Tpx2-003 152848082-152854949 processed_transcript
  ENSMUST00000143740 Tpx2-005 152882269-152884437 retained_intron
  ENSMUST00000144848 Tpx2-004 152869601-152881065 retained_intron
  ENSMUST00000164120 Tpx2-201 152847964-152895321 protein_coding
  ENSMUST00000178997 Tpx2-202 152847964-152895321 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028969ENSMUST00000109816ENSMUST00000136407ENSMUST00000143740ENSMUST00000144848ENSMUST00000164120ENSMUST00000178997
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028969 0.516±0.00 0.160±0.09 0.293±0.06 0.994±0.00 0.312±0.09 0.572±0.19 N/A 0.112±0.00 6.730±3.37 0.243±0.12 0.193±0.09 0.742±0.21 4.472±0.96 N/A
ENSMUST00000109816 0.653±0.21 0.327±0.20 0.456±0.24 3.496±2.69 N/A 0.722±0.00 0.075±0.02 0.038±0.00 17.805±17.86 0.173±0.00 0.246±0.04 2.323±1.12 8.671±6.55 2.811±0.94
ENSMUST00000136407 N/A 0.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143740 N/A 0.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.237±0.00 N/A
ENSMUST00000144848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.388±0.00
ENSMUST00000164120 0.114±0.00 N/A 0.359±0.00 2.823±1.38 0.469±0.00 0.574±0.08 N/A 0.098±0.05 5.007±1.73 0.230±0.07 N/A 0.805±0.44 2.975±1.60 1.060±0.37
ENSMUST00000178997 0.423±0.00 N/A 0.149±0.00 1.842±0.19 0.300±0.05 0.789±0.00 0.031±0.00 0.120±0.00 3.169±2.72 0.081±0.02 N/A 0.983±0.49 2.775±1.93 1.207±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A2 CIL_0001A2_0002 CGP 2:152780668-152895321
CIL_000319 CIL_000319_0003 CGP 2:152847964-152923068

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IEA spindle pole
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005819 IDA spindle
GO:0005874 IEA microtubule
GO:0006915 IEA apoptotic process
GO:0007067 IEA mitotic nuclear division
GO:0015630 IEA microtubule cytoskeleton
GO:0019901 IPI protein kinase binding
GO:0032147 ISS activation of protein kinase activity
GO:0043203 IDA axon hillock
GO:0060236 IMP regulation of mitotic spindle organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078654 tpx2 TPX2, microtubule-associated, homolog (Xenopus laevis) protein_coding Danio_rerio
ENSG00000088325 TPX2 TPX2, microtubule-associated protein_coding Homo_sapiens

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