C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028990 Cdk5rap1-201 ENSMUSG00000027487 10090 - 2:154335386-154372719 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028990 3.657±0.36 2.863±0.66 3.708±1.18 2.688±0.60 2.900±0.61 2.557±0.36 2.882±0.45 4.666±0.77 4.406±1.27 2.094±0.60 3.046±0.39 3.563±0.92 3.220±1.30 1.883±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000521 CIL_000521_0002 CGP 2:154335380-154408099

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006400 IEA tRNA modification
GO:0016740 IEA transferase activity
GO:0045736 ISS negative regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0046872 IEA metal ion binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339269 CDK5RAP1-012 protein_coding Homo_sapiens 0 883
ENST00000346416 CDK5RAP1-010 protein_coding Homo_sapiens 0 1886
ENST00000357886 CDK5RAP1-011 protein_coding Homo_sapiens 0 1009
ENST00000427097 CDK5RAP1-007 protein_coding Homo_sapiens 0 573
ENST00000460043 CDK5RAP1-003 processed_transcript Homo_sapiens 0 241
ENST00000461356 CDK5RAP1-015 processed_transcript Homo_sapiens 0 809
ENST00000461710 CDK5RAP1-014 retained_intron Homo_sapiens 0 508
ENST00000471264 CDK5RAP1-006 processed_transcript Homo_sapiens 0 697
ENST00000473791 CDK5RAP1-008 retained_intron Homo_sapiens 0 302
ENST00000473997 CDK5RAP1-013 protein_coding Homo_sapiens 0 1834
ENST00000477105 CDK5RAP1-016 processed_transcript Homo_sapiens 0 1103
ENST00000481964 CDK5RAP1-001 processed_transcript Homo_sapiens 0 695
ENST00000482967 CDK5RAP1-005 processed_transcript Homo_sapiens 0 579
ENST00000488723 CDK5RAP1-004 processed_transcript Homo_sapiens 0 691
ENST00000496381 CDK5RAP1-002 processed_transcript Homo_sapiens 0 941
ENST00000498525 CDK5RAP1-009 processed_transcript Homo_sapiens 0 614

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