C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-terminal EF-hand calcium binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000000895 Necab3-001 ENSMUSG00000027489 10090 - 2:154544399-154558866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000000895
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000000895 1.008±0.50 0.951±0.09 0.164±0.05 5.804±2.74 0.731±0.37 0.144±0.08 0.219±0.10 0.248±0.05 0.370±0.24 0.414±0.12 0.119±0.00 0.693±0.45 0.203±0.07 25.363±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051Z CIL_00051Z_0002 CGP 2:154436481-154558890
CIL_000520 CIL_000520_0002 CGP 2:154544399-154558890

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 ISS Golgi cis cisterna
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0019538 ISS protein metabolic process
GO:0042984 IEA regulation of amyloid precursor protein biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246190 NECAB3-010 protein_coding Homo_sapiens 0 429
ENST00000375238 NECAB3-003 protein_coding Homo_sapiens 0 1061
ENST00000463246 NECAB3-013 processed_transcript Homo_sapiens 0 337
ENST00000477778 NECAB3-002 processed_transcript Homo_sapiens 0 425
ENST00000478237 NECAB3-015 processed_transcript Homo_sapiens 0 721
ENST00000480994 NECAB3-006 protein_coding Homo_sapiens 0 640
ENST00000483813 NECAB3-007 processed_transcript Homo_sapiens 0 429
ENST00000485399 NECAB3-009 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000485976 NECAB3-014 processed_transcript Homo_sapiens 0 388
ENST00000488489 NECAB3-004 nonsense_mediated_decay Homo_sapiens 0 608
ENST00000494174 NECAB3-001 processed_transcript Homo_sapiens 0 608
ENST00000606525 NECAB3-018 processed_transcript Homo_sapiens 0 721
ENST00000606690 NECAB3-020 protein_coding Homo_sapiens 0 191

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