C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-terminal EF-hand calcium binding protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109716 Necab3-002 ENSMUSG00000027489 10090 - 2:154544399-154558851 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonHeartLiverLungMuscleOvaryPlacentaENSMUST00000109716
Transcript ID Adipose Brain Colon Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000109716 0.352±0.00 5.389±0.00 0.074±0.00 0.140±0.12 0.040±0.00 0.298±0.06 0.147±0.08 0.617±0.11 0.129±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051Z CIL_00051Z_0002 CGP 2:154436481-154558890
CIL_000520 CIL_000520_0002 CGP 2:154544399-154558890

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 ISS Golgi cis cisterna
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005737 ISS cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 ISS endoplasmic reticulum membrane
GO:0019538 ISS protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000246190 NECAB3-010 protein_coding Homo_sapiens 0 374
ENST00000375238 NECAB3-003 protein_coding Homo_sapiens 0 374
ENST00000463246 NECAB3-013 processed_transcript Homo_sapiens 0 536
ENST00000477778 NECAB3-002 processed_transcript Homo_sapiens 0 374
ENST00000478237 NECAB3-015 processed_transcript Homo_sapiens 0 374
ENST00000480994 NECAB3-006 protein_coding Homo_sapiens 0 291
ENST00000483813 NECAB3-007 processed_transcript Homo_sapiens 0 374
ENST00000485399 NECAB3-009 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000485976 NECAB3-014 processed_transcript Homo_sapiens 0 588
ENST00000488489 NECAB3-004 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000494174 NECAB3-001 processed_transcript Homo_sapiens 0 374
ENST00000606525 NECAB3-018 processed_transcript Homo_sapiens 0 374
ENST00000606690 NECAB3-020 protein_coding Homo_sapiens 0 822

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