C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027498 Cstf1 10090 + 2:172370681-172382448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000116375 Cstf1-001 172370734-172382448 protein_coding
  ENSMUST00000151511 Cstf1-002 172370681-172376070 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116375 12.466±2.87 15.373±4.48 11.126±0.74 8.959±5.64 14.852±3.65 13.320±0.55 6.786±0.94 13.346±1.80 12.876±3.88 10.904±1.04 3.106±0.83 17.866±10.10 8.986±6.32 29.899±5.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0002 VISTA 2:172130534-172731364
CIL_0002PV CIL_0002PV_0002 CGP 2:172356190-172382448
CIL_0005JF CIL_0005JF_0002 CGP 2:172370681-172433757

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044820 cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 protein_coding Danio_rerio
ENSG00000101138 CSTF1 cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa protein_coding Homo_sapiens

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