C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000116375 Cstf1-001 ENSMUSG00000027498 10090 + 2:172370734-172382448 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000116375
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000116375 12.466±2.87 15.373±4.48 11.126±0.74 8.959±5.64 14.852±3.65 13.320±0.55 6.786±0.94 13.346±1.80 12.876±3.88 10.904±1.04 3.106±0.83 17.866±10.10 8.986±6.32 29.899±5.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0002 VISTA 2:172130534-172731364
CIL_0002PV CIL_0002PV_0002 CGP 2:172356190-172382448
CIL_0005JF CIL_0005JF_0002 CGP 2:172370681-172433757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130800 cstf1-202 protein_coding Danio_rerio 0 926
ENSDART00000121847 cstf1-001 protein_coding Danio_rerio 0 926
ENSDART00000065877 cstf1-201 protein_coding Danio_rerio 0 226
ENST00000217109 CSTF1-001 protein_coding Homo_sapiens 0 1609
ENST00000415828 CSTF1-002 protein_coding Homo_sapiens 0 1192
ENST00000428552 CSTF1-006 protein_coding Homo_sapiens 0 484
ENST00000452950 CSTF1-003 protein_coding Homo_sapiens 0 1192
ENST00000490539 CSTF1-005 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000493039 CSTF1-007 nonsense_mediated_decay Homo_sapiens 0 1264
ENST00000498689 CSTF1-004 retained_intron Homo_sapiens 0 261
ENST00000613138 CSTF1-008 processed_transcript Homo_sapiens 0 351

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