C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000101138 CSTF1 9606 + 20:56392371-56406369 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000217109 CSTF1-001 56392394-56406369 protein_coding
  ENST00000415828 CSTF1-002 56392371-56399357 protein_coding
  ENST00000428552 CSTF1-006 56392411-56397463 protein_coding
  ENST00000452950 CSTF1-003 56392651-56399357 protein_coding
  ENST00000490539 CSTF1-005 56392695-56399161 nonsense_mediated_decay
  ENST00000493039 CSTF1-007 56392683-56404462 nonsense_mediated_decay
  ENST00000498689 CSTF1-004 56392371-56395937 retained_intron
  ENST00000613138 CSTF1-008 56392522-56397086 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000217109ENST00000415828ENST00000428552ENST00000452950ENST00000490539ENST00000493039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000217109 1.618±0.00 1.710±0.00 N/A 1.120±0.47 0.717±0.13 0.999±0.00 0.620±0.00 1.932±0.00 0.515±0.00 0.538±0.00 N/A 1.821±1.14 1.515±0.82 3.252±0.39
ENST00000415828 N/A N/A N/A 1.452±0.00 N/A 2.612±0.00 1.441±0.00 N/A 1.562±0.00 N/A 0.339±0.00 3.647±0.00 2.134±0.43 4.343±0.00
ENST00000428552 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.661±0.00 N/A N/A N/A N/A
ENST00000452950 N/A N/A 1.517±0.00 N/A N/A N/A 1.906±0.00 0.898±0.00 1.386±0.00 1.234±0.00 N/A N/A N/A N/A
ENST00000490539 N/A N/A N/A N/A 4.931±0.00 N/A N/A N/A N/A 1.399±0.00 1.165±0.00 3.731±0.00 N/A N/A
ENST00000493039 2.553±0.00 6.182±0.00 1.226±0.00 1.826±0.77 2.443±1.45 1.981±0.39 2.115±0.00 3.867±1.76 3.383±0.00 1.184±0.65 2.003±1.92 5.930±3.17 5.194±1.09 10.519±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0001 VISTA 20:56155251-56756351
CIL_0002PV CIL_0002PV_0001 CGP 20:56369389-56406369
CIL_0005JF CIL_0005JF_0001 CGP 20:56392371-56460387

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003723 TAS RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 TAS mRNA polyadenylation
GO:0006379 TAS mRNA cleavage
GO:0006396 TAS RNA processing
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044820 cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 protein_coding Danio_rerio
ENSMUSG00000027498 Cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 protein_coding Mus_musculus

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