C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002PV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087586-ENSG00000101138 CGP 9606 20:56369389-56406369
GeneTranscriptPositionBiotype
ENSG00000087586 (AURKA)
aurora kinase A 		ENST00000312783 (AURKA-004) 56369390-56392295 protein_coding
ENST00000347343 (AURKA-001) 56369390-56392205 protein_coding
ENST00000371356 (AURKA-005) 56369390-56392196 protein_coding
ENST00000395907 (AURKA-011) 56369665-56392215 protein_coding
ENST00000395911 (AURKA-010) 56369390-56392215 protein_coding
ENST00000395913 (AURKA-006) 56369390-56392337 protein_coding
ENST00000395914 (AURKA-201) 56369389-56392295 protein_coding
ENST00000395915 (AURKA-003) 56369390-56392296 protein_coding
ENST00000420474 (AURKA-009) 56382985-56392267 protein_coding
ENST00000422322 (AURKA-008) 56383111-56392131 protein_coding
ENST00000441357 (AURKA-002) 56373448-56392215 protein_coding
ENST00000451915 (AURKA-012) 56386337-56392202 protein_coding
ENST00000456249 (AURKA-007) 56386257-56392220 protein_coding
ENSG00000101138 (CSTF1)
cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa 		ENST00000217109 (CSTF1-001) 56392394-56406369 protein_coding
ENST00000415828 (CSTF1-002) 56392371-56399357 protein_coding
ENST00000428552 (CSTF1-006) 56392411-56397463 protein_coding
ENST00000452950 (CSTF1-003) 56392651-56399357 protein_coding
ENST00000490539 (CSTF1-005) 56392695-56399161 nonsense_mediated_decay
ENST00000493039 (CSTF1-007) 56392683-56404462 nonsense_mediated_decay
ENST00000498689 (CSTF1-004) 56392371-56395937 retained_intron
ENST00000613138 (CSTF1-008) 56392522-56397086 processed_transcript
CIL_0002PV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027496-ENSMUSG00000027498 CGP 10090 2:172356190-172382448
GeneTranscriptPositionBiotype
ENSMUSG00000027496 (Aurka)
aurora kinase A 		ENSMUST00000028997 (Aurka-201) 172356196-172370506 protein_coding
ENSMUST00000109139 (Aurka-002) 172356196-172370506 protein_coding
ENSMUST00000109140 (Aurka-001) 172356190-172370535 protein_coding
ENSMUST00000126107 (Aurka-003) 172366549-172370521 retained_intron
ENSMUST00000128004 (Aurka-004) 172357166-172363131 retained_intron
ENSMUSG00000027498 (Cstf1)
cleavage stimulation factor, 3' pre-RNA, subunit 1 		ENSMUST00000116375 (Cstf1-001) 172370734-172382448 protein_coding
ENSMUST00000151511 (Cstf1-002) 172370681-172376070 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PV_0001ENSG00000087586ENST00000312783ENST00000347343ENST00000371356ENST00000395907ENST00000395911ENST00000395913ENST00000395914ENST00000395915ENST00000420474ENST00000422322ENST00000441357ENST00000451915ENST00000456249ENSG00000101138ENST00000217109ENST00000415828ENST00000428552ENST00000452950ENST00000490539ENST00000493039ENST00000498689ENST00000613138CIL_0002PV_0002ENSMUSG00000027496ENSMUST00000028997ENSMUST00000109139ENSMUST00000109140ENSMUST00000126107ENSMUST00000128004ENSMUSG00000027498ENSMUST00000116375ENSMUST00000151511
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002PV_0001ENSG00000087586ENST00000312783ENST00000347343ENST00000371356ENST00000395907ENST00000395911ENST00000395913ENST00000395914ENST00000395915ENST00000420474ENST00000422322ENST00000441357ENST00000456249ENSG00000101138ENST00000217109ENST00000415828ENST00000428552ENST00000452950ENST00000490539ENST00000493039CIL_0002PV_0002ENSMUSG00000027496ENSMUST00000028997ENSMUST00000109140ENSMUST00000126107ENSMUST00000128004ENSMUSG00000027498ENSMUST00000116375
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087586 ENST00000312783 N/A N/A N/A N/A N/A N/A N/A 0.642±0.00 N/A N/A N/A 2.865±0.00 1.398±0.42 2.572±0.00
ENST00000347343 N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.270±1.77 1.229±0.33 5.836±3.27
ENST00000371356 0.367±0.00 0.276±0.00 N/A 0.287±0.00 0.529±0.00 1.066±0.00 0.815±0.00 N/A 0.257±0.00 0.254±0.00 0.561±0.00 3.620±3.09 2.649±2.04 7.657±3.64
ENST00000395907 N/A N/A N/A N/A 0.179±0.00 N/A 0.333±0.00 0.177±0.00 N/A N/A N/A N/A N/A 6.497±0.00
ENST00000395911 N/A N/A N/A N/A N/A 0.676±0.00 N/A 1.697±0.00 0.327±0.00 N/A N/A 0.262±0.00 N/A N/A
ENST00000395913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.254±0.83 0.681±0.00 2.467±0.00
ENST00000395914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A
ENST00000395915 0.058±0.00 N/A N/A 0.103±0.00 0.104±0.00 N/A 0.084±0.00 0.329±0.00 0.393±0.00 N/A N/A 2.712±1.38 1.736±1.06 3.850±0.00
ENST00000420474 N/A N/A N/A 0.368±0.00 N/A N/A 0.356±0.19 N/A N/A N/A 0.909±0.00 N/A N/A N/A
ENST00000422322 N/A N/A 0.585±0.00 N/A N/A N/A N/A N/A N/A N/A 0.848±0.00 N/A N/A N/A
ENST00000441357 N/A N/A N/A 0.539±0.00 0.807±0.00 N/A 0.179±0.00 N/A N/A N/A N/A 5.143±0.00 N/A 11.534±0.00
ENST00000451915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456249 N/A 0.855±0.00 N/A N/A 0.811±0.00 0.537±0.00 N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A
ENSG00000101138 ENST00000217109 1.618±0.00 1.710±0.00 N/A 1.120±0.47 0.717±0.13 0.999±0.00 0.620±0.00 1.932±0.00 0.515±0.00 0.538±0.00 N/A 1.821±1.14 1.515±0.82 3.252±0.39
ENST00000415828 N/A N/A N/A 1.452±0.00 N/A 2.612±0.00 1.441±0.00 N/A 1.562±0.00 N/A 0.339±0.00 3.647±0.00 2.134±0.43 4.343±0.00
ENST00000428552 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.661±0.00 N/A N/A N/A N/A
ENST00000452950 N/A N/A 1.517±0.00 N/A N/A N/A 1.906±0.00 0.898±0.00 1.386±0.00 1.234±0.00 N/A N/A N/A N/A
ENST00000490539 N/A N/A N/A N/A 4.931±0.00 N/A N/A N/A N/A 1.399±0.00 1.165±0.00 3.731±0.00 N/A N/A
ENST00000493039 2.553±0.00 6.182±0.00 1.226±0.00 1.826±0.77 2.443±1.45 1.981±0.39 2.115±0.00 3.867±1.76 3.383±0.00 1.184±0.65 2.003±1.92 5.930±3.17 5.194±1.09 10.519±1.21
ENST00000498689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027496 ENSMUST00000028997 N/A N/A 0.209±0.00 1.098±0.44 0.264±0.00 N/A N/A N/A 6.956±2.88 N/A N/A N/A 1.268±0.00 5.291±0.00
ENSMUST00000109139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109140 2.950±1.77 1.277±0.05 1.409±0.08 6.021±4.32 1.713±0.48 5.252±0.58 0.321±0.07 0.502±0.18 35.218±26.20 0.953±0.25 0.715±0.43 7.826±1.62 22.064±11.47 39.537±15.14
ENSMUST00000126107 N/A 0.808±0.00 N/A N/A N/A N/A 0.145±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000128004 N/A N/A N/A N/A N/A N/A 0.223±0.00 N/A N/A N/A 2.121±0.08 N/A N/A N/A
ENSMUSG00000027498 ENSMUST00000116375 12.466±2.87 15.373±4.48 11.126±0.74 8.959±5.64 14.852±3.65 13.320±0.55 6.786±0.94 13.346±1.80 12.876±3.88 10.904±1.04 3.106±0.83 17.866±10.10 8.986±6.32 29.899±5.05
ENSMUST00000151511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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