C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027613 Eif6 10090 - 2:155819832-155826925 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029142 Eif6-001 155819832-155826925 protein_coding
  ENSMUST00000109638 Eif6-002 155825166-155826663 protein_coding
  ENSMUST00000129830 Eif6-007 155822837-155826436 nonsense_mediated_decay
  ENSMUST00000134278 Eif6-005 155823875-155826766 protein_coding
  ENSMUST00000134811 Eif6-003 155819837-155822480 processed_transcript
  ENSMUST00000138962 Eif6-004 155822837-155826436 retained_intron
  ENSMUST00000154841 Eif6-008 155820033-155826436 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029142ENSMUST00000109638ENSMUST00000134811ENSMUST00000154841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029142 43.770±2.71 69.279±3.03 28.674±2.26 26.582±10.18 46.408±14.13 166.332±7.07 17.387±1.92 52.334±2.54 40.233±4.81 49.432±4.75 15.811±0.95 54.766±23.37 32.329±13.75 18.054±7.59
ENSMUST00000109638 N/A N/A N/A 1.012±0.00 3.676±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.584±0.00 34.501±0.00 N/A
ENSMUST00000154841 N/A N/A N/A N/A N/A N/A 6.171±0.00 N/A 24.197±3.63 N/A N/A 27.887±1.61 37.213±4.71 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0002HV CIL_0002HV_0002 CGP 2:155775342-155826925
CIL_0002HS CIL_0002HS_0002 CGP 2:155819832-155834854

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000054 IEA ribosomal subunit export from nucleus
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005638 IDA lamin filament
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005882 IDA intermediate filament
GO:0006413 IEA translational initiation
GO:0042256 IEA:ISS mature ribosome assembly
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043022 IEA:ISS ribosome binding
GO:0043023 IEA ribosomal large subunit binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020232 eif6 eukaryotic translation initiation factor 6 protein_coding Danio_rerio
ENSG00000242372 EIF6 eukaryotic translation initiation factor 6 protein_coding Homo_sapiens

Loading