C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: eukaryotic translation initiation factor 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000242372 EIF6 9606 - 20:35278907-35284985 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000374436 EIF6-002 35278911-35284715 protein_coding
  ENST00000374443 EIF6-005 35278911-35284770 protein_coding
  ENST00000374450 EIF6-001 35278911-35284985 protein_coding
  ENST00000415116 EIF6-004 35279740-35284786 nonsense_mediated_decay
  ENST00000440766 EIF6-007 35278911-35284523 nonsense_mediated_decay
  ENST00000447927 EIF6-003 35278911-35284804 nonsense_mediated_decay
  ENST00000456600 EIF6-008 35280698-35284985 protein_coding
  ENST00000462894 EIF6-006 35280074-35284702 processed_transcript
  ENST00000621148 EIF6-201 35278907-35284717 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374436ENST00000374450ENST00000447927ENST00000621148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374436 N/A N/A N/A N/A N/A 11.881±0.00 0.959±0.00 N/A N/A N/A N/A 28.074±0.00 N/A 28.852±0.00
ENST00000374450 N/A N/A N/A N/A N/A N/A 0.643±0.00 N/A N/A N/A N/A 68.330±0.00 N/A N/A
ENST00000447927 N/A 28.705±0.00 N/A N/A N/A 10.995±0.00 N/A 24.604±0.00 N/A N/A N/A 56.561±0.00 35.101±9.59 11.072±0.00
ENST00000621148 48.491±0.00 52.960±0.00 6.790±0.00 15.283±7.65 28.701±20.27 13.548±5.07 10.277±0.00 34.834±19.46 40.817±37.43 23.103±19.86 15.690±14.76 67.568±49.34 77.658±50.42 29.719±14.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0001 VISTA 20:35018152-35620688
CIL_0002HV CIL_0002HV_0001 CGP 20:35226654-35284985
CIL_0002HS CIL_0002HS_0001 CGP 20:35278907-35292401

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000054 IEA ribosomal subunit export from nucleus
GO:0003743 IEA translation initiation factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005638 IEA lamin filament
GO:0005737 IEA cytoplasm
GO:0005882 IEA intermediate filament
GO:0006413 IEA translational initiation
GO:0042256 IEA:IMP mature ribosome assembly
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043022 IEA:IDA ribosome binding
GO:0043023 IEA ribosomal large subunit binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020232 eif6 eukaryotic translation initiation factor 6 protein_coding Danio_rerio
ENSMUSG00000027613 Eif6 eukaryotic translation initiation factor 6 protein_coding Mus_musculus

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