C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029142 Eif6-001 ENSMUSG00000027613 10090 - 2:155819832-155826925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029142
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029142 43.770±2.71 69.279±3.03 28.674±2.26 26.582±10.18 46.408±14.13 166.332±7.07 17.387±1.92 52.334±2.54 40.233±4.81 49.432±4.75 15.811±0.95 54.766±23.37 32.329±13.75 18.054±7.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0002HV CIL_0002HV_0002 CGP 2:155775342-155826925
CIL_0002HS CIL_0002HS_0002 CGP 2:155819832-155834854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000054 IEA ribosomal subunit export from nucleus
GO:0003743 IEA translation initiation factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005638 IDA lamin filament
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005882 IDA intermediate filament
GO:0006413 IEA translational initiation
GO:0042256 IEA:ISS mature ribosome assembly
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0043022 IEA:ISS ribosome binding
GO:0043023 IEA ribosomal large subunit binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374436 EIF6-002 protein_coding Homo_sapiens 0 1070
ENST00000374443 EIF6-005 protein_coding Homo_sapiens 0 569
ENST00000374450 EIF6-001 protein_coding Homo_sapiens 0 1070
ENST00000415116 EIF6-004 nonsense_mediated_decay Homo_sapiens 0 610
ENST00000440766 EIF6-007 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000447927 EIF6-003 nonsense_mediated_decay Homo_sapiens 0 569
ENST00000456600 EIF6-008 protein_coding Homo_sapiens 0 429
ENST00000621148 EIF6-201 protein_coding Homo_sapiens 0 1070

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