C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000154841 Eif6-008 ENSMUSG00000027613 10090 - 2:155820033-155826436 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartLiverOvaryPlacentaENSMUST00000154841
Transcript ID Heart Liver Ovary Placenta
ENSMUST00000154841 6.171±0.00 24.197±3.63 27.887±1.61 37.213±4.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0002HV CIL_0002HV_0002 CGP 2:155775342-155826925
CIL_0002HS CIL_0002HS_0002 CGP 2:155819832-155834854

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005638 IDA lamin filament
GO:0005882 IDA intermediate filament
GO:0042256 IEA mature ribosome assembly
GO:0043022 IEA ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374436 EIF6-002 protein_coding Homo_sapiens 0 542
ENST00000374443 EIF6-005 protein_coding Homo_sapiens 0 542
ENST00000374450 EIF6-001 protein_coding Homo_sapiens 0 542
ENST00000415116 EIF6-004 nonsense_mediated_decay Homo_sapiens 0 239
ENST00000440766 EIF6-007 nonsense_mediated_decay Homo_sapiens 0 676
ENST00000447927 EIF6-003 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000621148 EIF6-201 protein_coding Homo_sapiens 0 542

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