C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: N-myc downstream regulated gene 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027634 Ndrg3 10090 - 2:156927345-156992056 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000069600 Ndrg3-002 156927345-156992043 protein_coding
  ENSMUST00000072298 Ndrg3-001 156927345-156992056 protein_coding
  ENSMUST00000109558 Ndrg3-004 156934303-156992035 protein_coding
  ENSMUST00000126627 Ndrg3-003 156956343-156992047 retained_intron
  ENSMUST00000131955 Ndrg3-005 156946018-156992000 processed_transcript
  ENSMUST00000132748 Ndrg3-006 156970061-156991996 processed_transcript
  ENSMUST00000140297 Ndrg3-008 156938576-156953393 processed_transcript
  ENSMUST00000149599 Ndrg3-009 156931152-156935005 processed_transcript
  ENSMUST00000156491 Ndrg3-010 156928403-156944066 processed_transcript
  ENSMUST00000156651 Ndrg3-007 156948261-156991927 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000069600ENSMUST00000072298ENSMUST00000131955ENSMUST00000140297
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000069600 4.363±0.51 7.605±0.31 3.419±0.29 12.994±5.20 5.635±0.55 8.527±1.77 1.697±0.01 5.856±0.00 2.750±1.07 3.968±0.55 3.437±0.93 4.451±0.57 1.626±0.29 18.577±4.12
ENSMUST00000072298 29.025±5.70 28.497±5.10 13.486±2.07 48.447±14.58 38.896±10.87 23.935±1.84 8.616±0.61 45.179±3.53 16.944±9.32 20.004±1.26 7.066±0.90 24.380±7.01 6.652±1.60 11.453±6.81
ENSMUST00000131955 N/A N/A N/A 144.564±0.00 N/A N/A N/A N/A N/A N/A N/A 26.950±0.00 8.402±0.06 34.308±0.00
ENSMUST00000140297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 64.106±5.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000304 CIL_000304_0003 CGP 2:156872457-156992056
CIL_0000XP CIL_0000XP_0002 CGP 2:156927345-157007154

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0008150 ND biological_process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010052 ndrg3b N-myc downstream regulated family member 3b protein_coding Danio_rerio
ENSDARG00000013087 ndrg3a N-myc downstream regulated family member 3a protein_coding Danio_rerio
ENSG00000101079 NDRG3 NDRG family member 3 protein_coding Homo_sapiens

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