C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-myc downstream regulated gene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072298 Ndrg3-001 ENSMUSG00000027634 10090 - 2:156927345-156992056 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072298
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072298 29.025±5.70 28.497±5.10 13.486±2.07 48.447±14.58 38.896±10.87 23.935±1.84 8.616±0.61 45.179±3.53 16.944±9.32 20.004±1.26 7.066±0.90 24.380±7.01 6.652±1.60 11.453±6.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000304 CIL_000304_0003 CGP 2:156872457-156992056
CIL_0000XP CIL_0000XP_0002 CGP 2:156927345-157007154

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000349004 NDRG3-001 protein_coding Homo_sapiens 0 1851
ENST00000359675 NDRG3-005 protein_coding Homo_sapiens 0 1685
ENST00000373773 NDRG3-201 protein_coding Homo_sapiens 0 1419
ENST00000373803 NDRG3-003 protein_coding Homo_sapiens 0 1197
ENST00000422536 NDRG3-004 protein_coding Homo_sapiens 0 575

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