C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029214 Actl6a-001 ENSMUSG00000027671 10090 + 3:32708546-32726968 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonLiverLungOvaryPlacentaTestisENSMUST00000029214
Transcript ID Adipose Brain Colon Liver Lung Ovary Placenta Testis
ENSMUST00000029214 8.111±1.60 10.608±0.00 10.438±0.00 20.408±8.24 7.958±0.88 11.175±2.67 17.277±3.54 18.761±4.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0002 CGP 3:32580332-32726968
CIL_00049Q CIL_00049Q_0003 CGP 3:32708546-32737147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IEA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0003407 IEA neural retina development
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005886 IEA plasma membrane
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007399 IMP nervous system development
GO:0016514 IEA SWI/SNF complex
GO:0031011 IEA Ino80 complex
GO:0031492 IEA nucleosomal DNA binding
GO:0035267 ISS NuA4 histone acetyltransferase complex
GO:0040008 IEA regulation of growth
GO:0043044 IEA ATP-dependent chromatin remodeling
GO:0043234 IEA protein complex
GO:0043967 ISS histone H4 acetylation
GO:0043968 ISS histone H2A acetylation
GO:0071564 IDA npBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000148532 actl6b-001 protein_coding Danio_rerio 0 521
ENSDART00000114640 actl6b-201 protein_coding Danio_rerio 0.000000000000001 90
ENST00000392662 ACTL6A-201 protein_coding Homo_sapiens 0 1845
ENST00000429709 ACTL6A-001 protein_coding Homo_sapiens 0 1908
ENST00000450518 ACTL6A-002 protein_coding Homo_sapiens 0 1849
ENST00000461125 ACTL6A-016 retained_intron Homo_sapiens 0 481
ENST00000467383 ACTL6A-013 retained_intron Homo_sapiens 0 226
ENST00000467615 ACTL6A-014 processed_transcript Homo_sapiens 0 601
ENST00000468767 ACTL6A-007 processed_transcript Homo_sapiens 0 512
ENST00000486471 ACTL6A-012 retained_intron Homo_sapiens 0 270
ENST00000487978 ACTL6A-011 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000494843 ACTL6A-008 retained_intron Homo_sapiens 0 512

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