C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin-like 6A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126144 Actl6a-003 ENSMUSG00000027671 10090 + 3:32709164-32718656 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENSMUST00000126144
Transcript ID Ovary Placenta Testis
ENSMUST00000126144 37.051±0.00 37.729±0.00 49.392±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FG CIL_0001FG_0002 CGP 3:32580332-32726968
CIL_00049Q CIL_00049Q_0003 CGP 3:32708546-32737147

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0006338 IDA chromatin remodeling
GO:0071564 IDA npBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392662 ACTL6A-201 protein_coding Homo_sapiens 0 902
ENST00000429709 ACTL6A-001 protein_coding Homo_sapiens 0 905
ENST00000450518 ACTL6A-002 protein_coding Homo_sapiens 0 911
ENST00000467383 ACTL6A-013 retained_intron Homo_sapiens 0 226
ENST00000467615 ACTL6A-014 processed_transcript Homo_sapiens 0 394
ENST00000468767 ACTL6A-007 processed_transcript Homo_sapiens 0 518
ENST00000486471 ACTL6A-012 retained_intron Homo_sapiens 0 270
ENST00000487978 ACTL6A-011 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000494843 ACTL6A-008 retained_intron Homo_sapiens 0 518

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