C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transient receptor potential cation channel, subfamily C, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027716 Trpc3 10090 - 3:36620482-36690167 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029271 Trpc3-001 36620482-36690167 protein_coding
  ENSMUST00000123220 Trpc3-004 36620562-36621361 processed_transcript
  ENSMUST00000129322 Trpc3-003 36620562-36621339 processed_transcript
  ENSMUST00000133542 Trpc3-005 36638356-36640620 retained_intron
  ENSMUST00000146475 Trpc3-002 36669203-36690167 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029271ENSMUST00000123220ENSMUST00000133542ENSMUST00000146475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029271 3.608±1.81 0.962±0.18 0.630±0.05 3.371±0.29 0.992±0.32 0.689±0.25 2.514±0.29 0.883±0.10 0.116±0.04 1.334±0.37 0.895±0.18 4.222±1.60 0.923±1.11 0.122±0.06
ENSMUST00000123220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.577±0.00 N/A
ENSMUST00000133542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.00
ENSMUST00000146475 N/A 0.566±0.00 N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A 1.294±0.47 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AB CIL_0007AB_0002 CGP 3:36573142-36690167
CIL_0007AC CIL_0007AC_0002 CGP 3:36620482-37053033

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005262 IEA calcium channel activity
GO:0005887 IEA integral component of plasma membrane
GO:0010524 IEA positive regulation of calcium ion transport into cytosol
GO:0033198 IEA response to ATP
GO:0051592 IEA response to calcium ion
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding
GO:1903244 IEA positive regulation of cardiac muscle hypertrophy in response to stress

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087463 TRPC3 transient receptor potential cation channel, subfamily C, member 3 protein_coding Danio_rerio
ENSG00000138741 TRPC3 transient receptor potential cation channel, subfamily C, member 3 protein_coding Homo_sapiens

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