C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029271 Trpc3-001 ENSMUSG00000027716 10090 - 3:36620482-36690167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029271
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029271 3.608±1.81 0.962±0.18 0.630±0.05 3.371±0.29 0.992±0.32 0.689±0.25 2.514±0.29 0.883±0.10 0.116±0.04 1.334±0.37 0.895±0.18 4.222±1.60 0.923±1.11 0.122±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AB CIL_0007AB_0002 CGP 3:36573142-36690167
CIL_0007AC CIL_0007AC_0002 CGP 3:36620482-37053033

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005262 IEA calcium channel activity
GO:0005887 IEA integral component of plasma membrane
GO:0010524 IEA positive regulation of calcium ion transport into cytosol
GO:0033198 IEA response to ATP
GO:0051592 IEA response to calcium ion
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding
GO:1903244 IEA positive regulation of cardiac muscle hypertrophy in response to stress

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000063619 TRPC7 (1 of 3)-201 protein_coding Danio_rerio 0 785
ENSDART00000138703 TRPC7 (1 of 3)-001 protein_coding Danio_rerio 0 785
ENST00000264811 TRPC3-001 protein_coding Homo_sapiens 0 3101
ENST00000352189 TRPC7-003 protein_coding Homo_sapiens 0 551
ENST00000378459 TRPC7-005 protein_coding Homo_sapiens 0 551
ENST00000379645 TRPC3-002 protein_coding Homo_sapiens 0 3164
ENST00000502753 TRPC7-006 protein_coding Homo_sapiens 0 627
ENST00000502968 TRPC3-003 protein_coding Homo_sapiens 0 296
ENST00000503275 TRPC7-002 nonsense_mediated_decay Homo_sapiens 0 1192
ENST00000506449 TRPC3-004 nonsense_mediated_decay Homo_sapiens 0 2242
ENST00000513104 TRPC7-001 protein_coding Homo_sapiens 0 1243
ENST00000513531 TRPC3-005 protein_coding Homo_sapiens 0 1792
ENST00000514963 TRPC7-004 nonsense_mediated_decay Homo_sapiens 0 553

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