C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vang-like 1 (van gogh, Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159388 Vangl1-001 ENSMUSG00000027860 10090 - 3:102156701-102204693 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159388 7.807±4.28 9.409±0.82 7.669±0.62 2.642±1.15 6.165±2.05 8.409±0.51 2.214±0.36 7.940±0.93 4.850±3.86 7.628±1.96 0.222±0.08 10.463±3.85 3.150±2.31 0.284±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HI CIL_0008HI_0002 VISTA 3:101762054-102363652

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0007275 IEA multicellular organismal development
GO:0016021 ISS integral component of membrane
GO:0016328 IDA lateral plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310260 VANGL1-003 protein_coding Homo_sapiens 0 2235
ENST00000355485 VANGL1-201 protein_coding Homo_sapiens 0 2316
ENST00000369509 VANGL1-002 protein_coding Homo_sapiens 0 2226
ENST00000369510 VANGL1-001 protein_coding Homo_sapiens 0 2235
ENST00000474344 VANGL1-005 processed_transcript Homo_sapiens 0 353
ENST00000478369 VANGL1-004 processed_transcript Homo_sapiens 0 346

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