C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leucine rich repeat containing 39
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027961 Lrrc39 10090 + 3:116562973-116583134 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029573 Lrrc39-001 116562978-116583134 protein_coding
  ENSMUST00000123785 Lrrc39-002 116562973-116573112 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000029573ENSMUST00000123785
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000029573 2.314±1.23 0.505±0.18 3.133±1.64 9.913±1.94 0.305±0.05 1.748±1.03 0.855±0.17 8.701±2.92 0.804±0.33 1.430±0.33
ENSMUST00000123785 2.137±0.14 0.505±0.00 N/A N/A 0.258±0.00 N/A N/A N/A 0.529±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EW CIL_0007EW_0002 CGP 3:116513070-116583134
CIL_0006G0 CIL_0006G0_0002 CGP 3:116562973-116614587

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071465 lrrc39 leucine rich repeat containing 39 protein_coding Danio_rerio
ENSG00000122477 LRRC39 leucine rich repeat containing 39 protein_coding Homo_sapiens

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