C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XI, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000060718 COL11A1 9606 - 1:102876467-103108496 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353414 COL11A1-201 102876468-103108496 protein_coding
  ENST00000358392 COL11A1-202 102876467-103108496 protein_coding
  ENST00000370096 COL11A1-001 102876467-103108491 protein_coding
  ENST00000427239 COL11A1-002 103008473-103108178 protein_coding
  ENST00000447608 COL11A1-003 103030901-103082859 protein_coding
  ENST00000461720 COL11A1-004 103001014-103008493 processed_transcript
  ENST00000465209 COL11A1-006 102961745-102962684 retained_intron
  ENST00000470170 COL11A1-007 102877717-102880018 retained_intron
  ENST00000475980 COL11A1-005 103001437-103004481 processed_transcript
  ENST00000512756 COL11A1-008 102877951-103108479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353414ENST00000370096ENST00000427239ENST00000461720ENST00000470170ENST00000512756
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353414 N/A N/A N/A N/A N/A N/A N/A 0.038±0.00 N/A N/A 0.339±0.00 0.086±0.00
ENST00000370096 N/A N/A 0.383±0.10 0.924±0.52 N/A N/A 0.081±0.00 N/A N/A 0.683±0.38 1.377±0.39 N/A
ENST00000427239 N/A 0.041±0.00 N/A 1.287±0.00 N/A 0.064±0.00 N/A 0.136±0.00 N/A N/A N/A N/A
ENST00000461720 N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A N/A N/A N/A 1.712±0.00
ENST00000470170 0.014±0.00 N/A N/A 1.212±0.00 N/A N/A N/A N/A N/A 2.084±0.72 1.858±0.00 0.849±0.58
ENST00000512756 N/A N/A 0.192±0.00 0.556±0.04 0.020±0.01 0.043±0.03 0.157±0.00 N/A 0.182±0.15 0.576±0.19 1.771±0.51 0.439±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Y CIL_00072Y_0003 CGP 1:101802574-103108496
CIL_00072Z CIL_00072Z_0002 CGP 1:102876467-103555239

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001502 IEA cartilage condensation
GO:0001503 IEA ossification
GO:0002063 IEA chondrocyte development
GO:0003007 IEA heart morphogenesis
GO:0005201 NAS:IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005592 NAS collagen type XI trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0006029 IEA proteoglycan metabolic process
GO:0007601 IMP visual perception
GO:0007605 IMP sensory perception of sound
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0031012 IEA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0035989 IEA tendon development
GO:0042472 IEA inner ear morphogenesis
GO:0046872 IEA metal ion binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0050840 NAS extracellular matrix binding
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0051216 IEA cartilage development
GO:0055010 IEA ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009014 col11a1b collagen, type XI, alpha 1b protein_coding Danio_rerio
ENSDARG00000026165 col11a1a collagen, type XI, alpha 1a protein_coding Danio_rerio
ENSMUSG00000027966 Col11a1 collagen, type XI, alpha 1 protein_coding Mus_musculus

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