Notice (8): Undefined index: CIL_0005I9_0001 [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
		'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
		'ENSG00000227408' => 'amylase, alpha pseudogene 1',
		'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
		'ENSG00000234441' => null,
		'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
		'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
		'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
		'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSMUSG00000070360' => 'amylase 2a1',
		'ENSMUSG00000074264' => 'amylase 1, salivary',
		'ENSMUSG00000074268' => 'amylase 2a5',
		'ENSMUSG00000096770' => 'amylase 2a4',
		'ENSMUSG00000093931' => 'amylase 2a3',
		'ENSMUSG00000096569' => 'amylase 2a2'
	),
	'gene_name_arr' => array(
		'ENSG00000174876' => 'AMY1B',
		'ENSG00000187733' => 'AMY1C',
		'ENSG00000227408' => 'AMYP1',
		'ENSG00000237763' => 'AMY1A',
		'ENSG00000234441' => 'RP5-1108M17.5',
		'ENSG00000185946' => 'RNPC3',
		'ENSG00000236085' => 'ACTG1P4',
		'ENSG00000240038' => 'AMY2B',
		'ENSG00000243480' => 'AMY2A',
		'ENSMUSG00000027981' => 'Rnpc3',
		'ENSMUSG00000070360' => 'Amy2a1',
		'ENSMUSG00000074264' => 'Amy1',
		'ENSMUSG00000074268' => 'Amy2a5',
		'ENSMUSG00000096770' => 'Amy2a4',
		'ENSMUSG00000093931' => 'Amy2a3',
		'ENSMUSG00000096569' => 'Amy2a2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 14 => 'Bladder',
		(int) 22 => 'Brain',
		(int) 50 => 'Breast',
		(int) 60 => 'Colon',
		(int) 69 => 'Heart',
		(int) 77 => 'Kidney',
		(int) 91 => 'Liver',
		(int) 112 => 'Lung',
		(int) 121 => 'Muscle',
		(int) 128 => 'Ovary',
		(int) 143 => 'Placenta',
		(int) 153 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 90,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330330' => array(
			'start' => '103687418',
			'end' => '103696290',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-201'
		),
		'ENST00000370080' => array(
			'start' => '103687415',
			'end' => '103696454',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-001'
		),
		'ENST00000425410' => array(
			'start' => '103694980',
			'end' => '103695952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-003'
		),
		'ENST00000446703' => array(
			'start' => '103693366',
			'end' => '103696680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-002'
		),
		'ENST00000464691' => array(
			'start' => '103692427',
			'end' => '103695163',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1B-004'
		),
		'ENST00000370079' => array(
			'start' => '103750406',
			'end' => '103758690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1C-001'
		),
		'ENST00000440059' => array(
			'start' => '103713723',
			'end' => '103719871',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AMYP1-001'
		),
		'ENST00000370083' => array(
			'start' => '103655755',
			'end' => '103664554',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-001'
		),
		'ENST00000422549' => array(
			'start' => '103656018',
			'end' => '103656990',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-003'
		),
		'ENST00000430659' => array(
			'start' => '103655290',
			'end' => '103658604',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-002'
		),
		'ENST00000461518' => array(
			'start' => '103656807',
			'end' => '103659543',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'AMY1A-004'
		),
		'ENST00000494409' => array(
			'start' => '103662744',
			'end' => '103664549',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1A-005'
		),
		'ENST00000610592' => array(
			'start' => '103656222',
			'end' => '103752946',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-201'
		),
		'ENST00000438604' => array(
			'start' => '103668071',
			'end' => '103668268',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'RP5-1108M17.5-001'
		),
		'ENST00000423855' => array(
			'start' => '103525971',
			'end' => '103555239',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-008'
		),
		'ENST00000524631' => array(
			'start' => '103525691',
			'end' => '103553343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-001'
		),
		'ENST00000524641' => array(
			'start' => '103541361',
			'end' => '103547035',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-006'
		),
		'ENST00000525323' => array(
			'start' => '103546927',
			'end' => '103551263',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-007'
		),
		'ENST00000527062' => array(
			'start' => '103525757',
			'end' => '103541475',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-005'
		),
		'ENST00000531883' => array(
			'start' => '103525697',
			'end' => '103535441',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-004'
		),
		'ENST00000532117' => array(
			'start' => '103551724',
			'end' => '103553714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RNPC3-009'
		),
		'ENST00000533099' => array(
			'start' => '103525699',
			'end' => '103555112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-003'
		),
		'ENST00000533834' => array(
			'start' => '103537388',
			'end' => '103552778',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-002'
		),
		'ENST00000425123' => array(
			'start' => '103569553',
			'end' => '103570674',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ACTG1P4-001'
		),
		'ENST00000361355' => array(
			'start' => '103554700',
			'end' => '103579529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-001'
		),
		'ENST00000435302' => array(
			'start' => '103561757',
			'end' => '103572229',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-004'
		),
		'ENST00000453959' => array(
			'start' => '103565031',
			'end' => '103572200',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-005'
		),
		'ENST00000462971' => array(
			'start' => '103575315',
			'end' => '103575781',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-006'
		),
		'ENST00000477657' => array(
			'start' => '103553815',
			'end' => '103579530',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'AMY2B-002'
		),
		'ENST00000481821' => array(
			'start' => '103577387',
			'end' => '103579534',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-007'
		),
		'ENST00000491397' => array(
			'start' => '103568334',
			'end' => '103579530',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-003'
		),
		'ENST00000610648' => array(
			'start' => '103571100',
			'end' => '103579530',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-201'
		),
		'ENST00000414303' => array(
			'start' => '103617377',
			'end' => '103625780',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-001'
		),
		'ENST00000423678' => array(
			'start' => '103617446',
			'end' => '103620668',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-002'
		),
		'ENST00000497748' => array(
			'start' => '103621562',
			'end' => '103625605',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2A-003'
		),
		'ENST00000622339' => array(
			'start' => '103616811',
			'end' => '103625777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-201'
		),
		'ENSMUST00000092154' => array(
			'start' => '113605067',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-001'
		),
		'ENSMUST00000106535' => array(
			'start' => '113606336',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-002'
		),
		'ENSMUST00000106536' => array(
			'start' => '113605464',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-003'
		),
		'ENSMUST00000123232' => array(
			'start' => '113616553',
			'end' => '113621965',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-006'
		),
		'ENSMUST00000127068' => array(
			'start' => '113627078',
			'end' => '113630079',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rnpc3-004'
		),
		'ENSMUST00000132220' => array(
			'start' => '113611133',
			'end' => '113615440',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-008'
		),
		'ENSMUST00000135712' => array(
			'start' => '113616802',
			'end' => '113621316',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-007'
		),
		'ENSMUST00000153853' => array(
			'start' => '113605067',
			'end' => '113629900',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-005'
		),
		'ENSMUST00000132353' => array(
			'start' => '113529403',
			'end' => '113532428',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a1-001'
		),
		'ENSMUST00000067980' => array(
			'start' => '113555710',
			'end' => '113577830',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-001'
		),
		'ENSMUST00000106540' => array(
			'start' => '113555953',
			'end' => '113574762',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-002'
		),
		'ENSMUST00000142505' => array(
			'start' => '113562690',
			'end' => '113574272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-003'
		),
		'ENSMUST00000172885' => array(
			'start' => '113556149',
			'end' => '113562018',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy1-005'
		),
		'ENSMUST00000174147' => array(
			'start' => '113564987',
			'end' => '113606699',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-004'
		),
		'ENSMUST00000098673' => array(
			'start' => '113249176',
			'end' => '113258837',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a5-001'
		),
		'ENSMUST00000144352' => array(
			'start' => '113257780',
			'end' => '113258651',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy2a5-002'
		),
		'ENSMUST00000179568' => array(
			'start' => '113281843',
			'end' => '113291449',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a4-001'
		),
		'ENSMUST00000179314' => array(
			'start' => '113314455',
			'end' => '113324052',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a3-001'
		),
		'ENSMUST00000098667' => array(
			'start' => '113347055',
			'end' => '113356658',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
	'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
	'ENSG00000227408' => 'amylase, alpha pseudogene 1',
	'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
	'ENSG00000234441' => null,
	'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
	'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
	'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
	'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSMUSG00000070360' => 'amylase 2a1',
	'ENSMUSG00000074264' => 'amylase 1, salivary',
	'ENSMUSG00000074268' => 'amylase 2a5',
	'ENSMUSG00000096770' => 'amylase 2a4',
	'ENSMUSG00000093931' => 'amylase 2a3',
	'ENSMUSG00000096569' => 'amylase 2a2'
)
$gene_name_arr = array(
	'ENSG00000174876' => 'AMY1B',
	'ENSG00000187733' => 'AMY1C',
	'ENSG00000227408' => 'AMYP1',
	'ENSG00000237763' => 'AMY1A',
	'ENSG00000234441' => 'RP5-1108M17.5',
	'ENSG00000185946' => 'RNPC3',
	'ENSG00000236085' => 'ACTG1P4',
	'ENSG00000240038' => 'AMY2B',
	'ENSG00000243480' => 'AMY2A',
	'ENSMUSG00000027981' => 'Rnpc3',
	'ENSMUSG00000070360' => 'Amy2a1',
	'ENSMUSG00000074264' => 'Amy1',
	'ENSMUSG00000074268' => 'Amy2a5',
	'ENSMUSG00000096770' => 'Amy2a4',
	'ENSMUSG00000093931' => 'Amy2a3',
	'ENSMUSG00000096569' => 'Amy2a2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0001',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103687415',
			'seq_end' => '103758690',
			'region_length' => '71275',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174876-ENSG00000187733'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0002',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103655290',
			'seq_end' => '103752946',
			'region_length' => '97656',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000237763-ENSG00000237763'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0003',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103553815',
			'seq_end' => '103625780',
			'region_length' => '71965',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240038-ENSG00000243480'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0004',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103616811',
			'seq_end' => '103752946',
			'region_length' => '136135',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000243480-ENSG00000237763'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0005',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113529403',
			'seq_end' => '113606699',
			'region_length' => '77296',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000070360-ENSMUSG00000074264'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0006',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113249176',
			'seq_end' => '113291449',
			'region_length' => '42273',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000074268-ENSMUSG00000096770'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0007',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113314455',
			'seq_end' => '113356658',
			'region_length' => '42203',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000093931-ENSMUSG00000096569'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0008',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113347055',
			'seq_end' => '113532428',
			'region_length' => '185373',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096569-ENSMUSG00000070360'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0009',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113281843',
			'seq_end' => '113324052',
			'region_length' => '42209',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096770-ENSMUSG00000093931'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 14 => 'Bladder',
	(int) 22 => 'Brain',
	(int) 50 => 'Breast',
	(int) 60 => 'Colon',
	(int) 69 => 'Heart',
	(int) 77 => 'Kidney',
	(int) 91 => 'Liver',
	(int) 112 => 'Lung',
	(int) 121 => 'Muscle',
	(int) 128 => 'Ovary',
	(int) 143 => 'Placenta',
	(int) 153 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330330' => array(
		'start' => '103687418',
		'end' => '103696290',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-201'
	),
	'ENST00000370080' => array(
		'start' => '103687415',
		'end' => '103696454',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-001'
	),
	'ENST00000425410' => array(
		'start' => '103694980',
		'end' => '103695952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-003'
	),
	'ENST00000446703' => array(
		'start' => '103693366',
		'end' => '103696680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-002'
	),
	'ENST00000464691' => array(
		'start' => '103692427',
		'end' => '103695163',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1B-004'
	),
	'ENST00000370079' => array(
		'start' => '103750406',
		'end' => '103758690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1C-001'
	),
	'ENST00000440059' => array(
		'start' => '103713723',
		'end' => '103719871',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AMYP1-001'
	),
	'ENST00000370083' => array(
		'start' => '103655755',
		'end' => '103664554',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-001'
	),
	'ENST00000422549' => array(
		'start' => '103656018',
		'end' => '103656990',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-003'
	),
	'ENST00000430659' => array(
		'start' => '103655290',
		'end' => '103658604',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-002'
	),
	'ENST00000461518' => array(
		'start' => '103656807',
		'end' => '103659543',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'AMY1A-004'
	),
	'ENST00000494409' => array(
		'start' => '103662744',
		'end' => '103664549',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1A-005'
	),
	'ENST00000610592' => array(
		'start' => '103656222',
		'end' => '103752946',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-201'
	),
	'ENST00000438604' => array(
		'start' => '103668071',
		'end' => '103668268',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'RP5-1108M17.5-001'
	),
	'ENST00000423855' => array(
		'start' => '103525971',
		'end' => '103555239',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-008'
	),
	'ENST00000524631' => array(
		'start' => '103525691',
		'end' => '103553343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-001'
	),
	'ENST00000524641' => array(
		'start' => '103541361',
		'end' => '103547035',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-006'
	),
	'ENST00000525323' => array(
		'start' => '103546927',
		'end' => '103551263',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-007'
	),
	'ENST00000527062' => array(
		'start' => '103525757',
		'end' => '103541475',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-005'
	),
	'ENST00000531883' => array(
		'start' => '103525697',
		'end' => '103535441',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-004'
	),
	'ENST00000532117' => array(
		'start' => '103551724',
		'end' => '103553714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RNPC3-009'
	),
	'ENST00000533099' => array(
		'start' => '103525699',
		'end' => '103555112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-003'
	),
	'ENST00000533834' => array(
		'start' => '103537388',
		'end' => '103552778',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-002'
	),
	'ENST00000425123' => array(
		'start' => '103569553',
		'end' => '103570674',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ACTG1P4-001'
	),
	'ENST00000361355' => array(
		'start' => '103554700',
		'end' => '103579529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-001'
	),
	'ENST00000435302' => array(
		'start' => '103561757',
		'end' => '103572229',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-004'
	),
	'ENST00000453959' => array(
		'start' => '103565031',
		'end' => '103572200',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-005'
	),
	'ENST00000462971' => array(
		'start' => '103575315',
		'end' => '103575781',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-006'
	),
	'ENST00000477657' => array(
		'start' => '103553815',
		'end' => '103579530',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'AMY2B-002'
	),
	'ENST00000481821' => array(
		'start' => '103577387',
		'end' => '103579534',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-007'
	),
	'ENST00000491397' => array(
		'start' => '103568334',
		'end' => '103579530',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-003'
	),
	'ENST00000610648' => array(
		'start' => '103571100',
		'end' => '103579530',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-201'
	),
	'ENST00000414303' => array(
		'start' => '103617377',
		'end' => '103625780',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-001'
	),
	'ENST00000423678' => array(
		'start' => '103617446',
		'end' => '103620668',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-002'
	),
	'ENST00000497748' => array(
		'start' => '103621562',
		'end' => '103625605',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2A-003'
	),
	'ENST00000622339' => array(
		'start' => '103616811',
		'end' => '103625777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-201'
	),
	'ENSMUST00000092154' => array(
		'start' => '113605067',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-001'
	),
	'ENSMUST00000106535' => array(
		'start' => '113606336',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-002'
	),
	'ENSMUST00000106536' => array(
		'start' => '113605464',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-003'
	),
	'ENSMUST00000123232' => array(
		'start' => '113616553',
		'end' => '113621965',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-006'
	),
	'ENSMUST00000127068' => array(
		'start' => '113627078',
		'end' => '113630079',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rnpc3-004'
	),
	'ENSMUST00000132220' => array(
		'start' => '113611133',
		'end' => '113615440',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-008'
	),
	'ENSMUST00000135712' => array(
		'start' => '113616802',
		'end' => '113621316',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-007'
	),
	'ENSMUST00000153853' => array(
		'start' => '113605067',
		'end' => '113629900',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-005'
	),
	'ENSMUST00000132353' => array(
		'start' => '113529403',
		'end' => '113532428',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a1-001'
	),
	'ENSMUST00000067980' => array(
		'start' => '113555710',
		'end' => '113577830',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-001'
	),
	'ENSMUST00000106540' => array(
		'start' => '113555953',
		'end' => '113574762',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-002'
	),
	'ENSMUST00000142505' => array(
		'start' => '113562690',
		'end' => '113574272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-003'
	),
	'ENSMUST00000172885' => array(
		'start' => '113556149',
		'end' => '113562018',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy1-005'
	),
	'ENSMUST00000174147' => array(
		'start' => '113564987',
		'end' => '113606699',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-004'
	),
	'ENSMUST00000098673' => array(
		'start' => '113249176',
		'end' => '113258837',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a5-001'
	),
	'ENSMUST00000144352' => array(
		'start' => '113257780',
		'end' => '113258651',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy2a5-002'
	),
	'ENSMUST00000179568' => array(
		'start' => '113281843',
		'end' => '113291449',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a4-001'
	),
	'ENSMUST00000179314' => array(
		'start' => '113314455',
		'end' => '113324052',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a3-001'
	),
	'ENSMUST00000098667' => array(
		'start' => '113347055',
		'end' => '113356658',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005I9_0001',
		'tax_id' => '9606',
		'chromosome' => '1',
		'seq_start' => '103687415',
		'seq_end' => '103758690',
		'region_length' => '71275',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000174876-ENSG00000187733'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
		'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
		'ENSG00000227408' => 'amylase, alpha pseudogene 1',
		'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
		'ENSG00000234441' => null,
		'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
		'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
		'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
		'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSMUSG00000070360' => 'amylase 2a1',
		'ENSMUSG00000074264' => 'amylase 1, salivary',
		'ENSMUSG00000074268' => 'amylase 2a5',
		'ENSMUSG00000096770' => 'amylase 2a4',
		'ENSMUSG00000093931' => 'amylase 2a3',
		'ENSMUSG00000096569' => 'amylase 2a2'
	),
	'gene_name_arr' => array(
		'ENSG00000174876' => 'AMY1B',
		'ENSG00000187733' => 'AMY1C',
		'ENSG00000227408' => 'AMYP1',
		'ENSG00000237763' => 'AMY1A',
		'ENSG00000234441' => 'RP5-1108M17.5',
		'ENSG00000185946' => 'RNPC3',
		'ENSG00000236085' => 'ACTG1P4',
		'ENSG00000240038' => 'AMY2B',
		'ENSG00000243480' => 'AMY2A',
		'ENSMUSG00000027981' => 'Rnpc3',
		'ENSMUSG00000070360' => 'Amy2a1',
		'ENSMUSG00000074264' => 'Amy1',
		'ENSMUSG00000074268' => 'Amy2a5',
		'ENSMUSG00000096770' => 'Amy2a4',
		'ENSMUSG00000093931' => 'Amy2a3',
		'ENSMUSG00000096569' => 'Amy2a2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 14 => 'Bladder',
		(int) 22 => 'Brain',
		(int) 50 => 'Breast',
		(int) 60 => 'Colon',
		(int) 69 => 'Heart',
		(int) 77 => 'Kidney',
		(int) 91 => 'Liver',
		(int) 112 => 'Lung',
		(int) 121 => 'Muscle',
		(int) 128 => 'Ovary',
		(int) 143 => 'Placenta',
		(int) 153 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 90,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330330' => array(
			'start' => '103687418',
			'end' => '103696290',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-201'
		),
		'ENST00000370080' => array(
			'start' => '103687415',
			'end' => '103696454',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-001'
		),
		'ENST00000425410' => array(
			'start' => '103694980',
			'end' => '103695952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-003'
		),
		'ENST00000446703' => array(
			'start' => '103693366',
			'end' => '103696680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-002'
		),
		'ENST00000464691' => array(
			'start' => '103692427',
			'end' => '103695163',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1B-004'
		),
		'ENST00000370079' => array(
			'start' => '103750406',
			'end' => '103758690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1C-001'
		),
		'ENST00000440059' => array(
			'start' => '103713723',
			'end' => '103719871',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AMYP1-001'
		),
		'ENST00000370083' => array(
			'start' => '103655755',
			'end' => '103664554',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-001'
		),
		'ENST00000422549' => array(
			'start' => '103656018',
			'end' => '103656990',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-003'
		),
		'ENST00000430659' => array(
			'start' => '103655290',
			'end' => '103658604',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-002'
		),
		'ENST00000461518' => array(
			'start' => '103656807',
			'end' => '103659543',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'AMY1A-004'
		),
		'ENST00000494409' => array(
			'start' => '103662744',
			'end' => '103664549',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1A-005'
		),
		'ENST00000610592' => array(
			'start' => '103656222',
			'end' => '103752946',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-201'
		),
		'ENST00000438604' => array(
			'start' => '103668071',
			'end' => '103668268',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'RP5-1108M17.5-001'
		),
		'ENST00000423855' => array(
			'start' => '103525971',
			'end' => '103555239',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-008'
		),
		'ENST00000524631' => array(
			'start' => '103525691',
			'end' => '103553343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-001'
		),
		'ENST00000524641' => array(
			'start' => '103541361',
			'end' => '103547035',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-006'
		),
		'ENST00000525323' => array(
			'start' => '103546927',
			'end' => '103551263',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-007'
		),
		'ENST00000527062' => array(
			'start' => '103525757',
			'end' => '103541475',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-005'
		),
		'ENST00000531883' => array(
			'start' => '103525697',
			'end' => '103535441',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-004'
		),
		'ENST00000532117' => array(
			'start' => '103551724',
			'end' => '103553714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RNPC3-009'
		),
		'ENST00000533099' => array(
			'start' => '103525699',
			'end' => '103555112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-003'
		),
		'ENST00000533834' => array(
			'start' => '103537388',
			'end' => '103552778',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-002'
		),
		'ENST00000425123' => array(
			'start' => '103569553',
			'end' => '103570674',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ACTG1P4-001'
		),
		'ENST00000361355' => array(
			'start' => '103554700',
			'end' => '103579529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-001'
		),
		'ENST00000435302' => array(
			'start' => '103561757',
			'end' => '103572229',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-004'
		),
		'ENST00000453959' => array(
			'start' => '103565031',
			'end' => '103572200',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-005'
		),
		'ENST00000462971' => array(
			'start' => '103575315',
			'end' => '103575781',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-006'
		),
		'ENST00000477657' => array(
			'start' => '103553815',
			'end' => '103579530',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'AMY2B-002'
		),
		'ENST00000481821' => array(
			'start' => '103577387',
			'end' => '103579534',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-007'
		),
		'ENST00000491397' => array(
			'start' => '103568334',
			'end' => '103579530',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-003'
		),
		'ENST00000610648' => array(
			'start' => '103571100',
			'end' => '103579530',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-201'
		),
		'ENST00000414303' => array(
			'start' => '103617377',
			'end' => '103625780',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-001'
		),
		'ENST00000423678' => array(
			'start' => '103617446',
			'end' => '103620668',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-002'
		),
		'ENST00000497748' => array(
			'start' => '103621562',
			'end' => '103625605',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2A-003'
		),
		'ENST00000622339' => array(
			'start' => '103616811',
			'end' => '103625777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-201'
		),
		'ENSMUST00000092154' => array(
			'start' => '113605067',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-001'
		),
		'ENSMUST00000106535' => array(
			'start' => '113606336',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-002'
		),
		'ENSMUST00000106536' => array(
			'start' => '113605464',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-003'
		),
		'ENSMUST00000123232' => array(
			'start' => '113616553',
			'end' => '113621965',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-006'
		),
		'ENSMUST00000127068' => array(
			'start' => '113627078',
			'end' => '113630079',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rnpc3-004'
		),
		'ENSMUST00000132220' => array(
			'start' => '113611133',
			'end' => '113615440',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-008'
		),
		'ENSMUST00000135712' => array(
			'start' => '113616802',
			'end' => '113621316',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-007'
		),
		'ENSMUST00000153853' => array(
			'start' => '113605067',
			'end' => '113629900',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-005'
		),
		'ENSMUST00000132353' => array(
			'start' => '113529403',
			'end' => '113532428',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a1-001'
		),
		'ENSMUST00000067980' => array(
			'start' => '113555710',
			'end' => '113577830',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-001'
		),
		'ENSMUST00000106540' => array(
			'start' => '113555953',
			'end' => '113574762',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-002'
		),
		'ENSMUST00000142505' => array(
			'start' => '113562690',
			'end' => '113574272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-003'
		),
		'ENSMUST00000172885' => array(
			'start' => '113556149',
			'end' => '113562018',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy1-005'
		),
		'ENSMUST00000174147' => array(
			'start' => '113564987',
			'end' => '113606699',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-004'
		),
		'ENSMUST00000098673' => array(
			'start' => '113249176',
			'end' => '113258837',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a5-001'
		),
		'ENSMUST00000144352' => array(
			'start' => '113257780',
			'end' => '113258651',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy2a5-002'
		),
		'ENSMUST00000179568' => array(
			'start' => '113281843',
			'end' => '113291449',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a4-001'
		),
		'ENSMUST00000179314' => array(
			'start' => '113314455',
			'end' => '113324052',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a3-001'
		),
		'ENSMUST00000098667' => array(
			'start' => '113347055',
			'end' => '113356658',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
	'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
	'ENSG00000227408' => 'amylase, alpha pseudogene 1',
	'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
	'ENSG00000234441' => null,
	'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
	'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
	'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
	'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSMUSG00000070360' => 'amylase 2a1',
	'ENSMUSG00000074264' => 'amylase 1, salivary',
	'ENSMUSG00000074268' => 'amylase 2a5',
	'ENSMUSG00000096770' => 'amylase 2a4',
	'ENSMUSG00000093931' => 'amylase 2a3',
	'ENSMUSG00000096569' => 'amylase 2a2'
)
$gene_name_arr = array(
	'ENSG00000174876' => 'AMY1B',
	'ENSG00000187733' => 'AMY1C',
	'ENSG00000227408' => 'AMYP1',
	'ENSG00000237763' => 'AMY1A',
	'ENSG00000234441' => 'RP5-1108M17.5',
	'ENSG00000185946' => 'RNPC3',
	'ENSG00000236085' => 'ACTG1P4',
	'ENSG00000240038' => 'AMY2B',
	'ENSG00000243480' => 'AMY2A',
	'ENSMUSG00000027981' => 'Rnpc3',
	'ENSMUSG00000070360' => 'Amy2a1',
	'ENSMUSG00000074264' => 'Amy1',
	'ENSMUSG00000074268' => 'Amy2a5',
	'ENSMUSG00000096770' => 'Amy2a4',
	'ENSMUSG00000093931' => 'Amy2a3',
	'ENSMUSG00000096569' => 'Amy2a2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0001',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103687415',
			'seq_end' => '103758690',
			'region_length' => '71275',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174876-ENSG00000187733'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0002',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103655290',
			'seq_end' => '103752946',
			'region_length' => '97656',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000237763-ENSG00000237763'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0003',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103553815',
			'seq_end' => '103625780',
			'region_length' => '71965',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240038-ENSG00000243480'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0004',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103616811',
			'seq_end' => '103752946',
			'region_length' => '136135',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000243480-ENSG00000237763'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0005',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113529403',
			'seq_end' => '113606699',
			'region_length' => '77296',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000070360-ENSMUSG00000074264'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0006',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113249176',
			'seq_end' => '113291449',
			'region_length' => '42273',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000074268-ENSMUSG00000096770'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0007',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113314455',
			'seq_end' => '113356658',
			'region_length' => '42203',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000093931-ENSMUSG00000096569'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0008',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113347055',
			'seq_end' => '113532428',
			'region_length' => '185373',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096569-ENSMUSG00000070360'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0009',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113281843',
			'seq_end' => '113324052',
			'region_length' => '42209',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096770-ENSMUSG00000093931'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 14 => 'Bladder',
	(int) 22 => 'Brain',
	(int) 50 => 'Breast',
	(int) 60 => 'Colon',
	(int) 69 => 'Heart',
	(int) 77 => 'Kidney',
	(int) 91 => 'Liver',
	(int) 112 => 'Lung',
	(int) 121 => 'Muscle',
	(int) 128 => 'Ovary',
	(int) 143 => 'Placenta',
	(int) 153 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330330' => array(
		'start' => '103687418',
		'end' => '103696290',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-201'
	),
	'ENST00000370080' => array(
		'start' => '103687415',
		'end' => '103696454',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-001'
	),
	'ENST00000425410' => array(
		'start' => '103694980',
		'end' => '103695952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-003'
	),
	'ENST00000446703' => array(
		'start' => '103693366',
		'end' => '103696680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-002'
	),
	'ENST00000464691' => array(
		'start' => '103692427',
		'end' => '103695163',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1B-004'
	),
	'ENST00000370079' => array(
		'start' => '103750406',
		'end' => '103758690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1C-001'
	),
	'ENST00000440059' => array(
		'start' => '103713723',
		'end' => '103719871',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AMYP1-001'
	),
	'ENST00000370083' => array(
		'start' => '103655755',
		'end' => '103664554',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-001'
	),
	'ENST00000422549' => array(
		'start' => '103656018',
		'end' => '103656990',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-003'
	),
	'ENST00000430659' => array(
		'start' => '103655290',
		'end' => '103658604',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-002'
	),
	'ENST00000461518' => array(
		'start' => '103656807',
		'end' => '103659543',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'AMY1A-004'
	),
	'ENST00000494409' => array(
		'start' => '103662744',
		'end' => '103664549',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1A-005'
	),
	'ENST00000610592' => array(
		'start' => '103656222',
		'end' => '103752946',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-201'
	),
	'ENST00000438604' => array(
		'start' => '103668071',
		'end' => '103668268',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'RP5-1108M17.5-001'
	),
	'ENST00000423855' => array(
		'start' => '103525971',
		'end' => '103555239',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-008'
	),
	'ENST00000524631' => array(
		'start' => '103525691',
		'end' => '103553343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-001'
	),
	'ENST00000524641' => array(
		'start' => '103541361',
		'end' => '103547035',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-006'
	),
	'ENST00000525323' => array(
		'start' => '103546927',
		'end' => '103551263',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-007'
	),
	'ENST00000527062' => array(
		'start' => '103525757',
		'end' => '103541475',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-005'
	),
	'ENST00000531883' => array(
		'start' => '103525697',
		'end' => '103535441',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-004'
	),
	'ENST00000532117' => array(
		'start' => '103551724',
		'end' => '103553714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RNPC3-009'
	),
	'ENST00000533099' => array(
		'start' => '103525699',
		'end' => '103555112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-003'
	),
	'ENST00000533834' => array(
		'start' => '103537388',
		'end' => '103552778',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-002'
	),
	'ENST00000425123' => array(
		'start' => '103569553',
		'end' => '103570674',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ACTG1P4-001'
	),
	'ENST00000361355' => array(
		'start' => '103554700',
		'end' => '103579529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-001'
	),
	'ENST00000435302' => array(
		'start' => '103561757',
		'end' => '103572229',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-004'
	),
	'ENST00000453959' => array(
		'start' => '103565031',
		'end' => '103572200',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-005'
	),
	'ENST00000462971' => array(
		'start' => '103575315',
		'end' => '103575781',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-006'
	),
	'ENST00000477657' => array(
		'start' => '103553815',
		'end' => '103579530',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'AMY2B-002'
	),
	'ENST00000481821' => array(
		'start' => '103577387',
		'end' => '103579534',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-007'
	),
	'ENST00000491397' => array(
		'start' => '103568334',
		'end' => '103579530',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-003'
	),
	'ENST00000610648' => array(
		'start' => '103571100',
		'end' => '103579530',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-201'
	),
	'ENST00000414303' => array(
		'start' => '103617377',
		'end' => '103625780',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-001'
	),
	'ENST00000423678' => array(
		'start' => '103617446',
		'end' => '103620668',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-002'
	),
	'ENST00000497748' => array(
		'start' => '103621562',
		'end' => '103625605',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2A-003'
	),
	'ENST00000622339' => array(
		'start' => '103616811',
		'end' => '103625777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-201'
	),
	'ENSMUST00000092154' => array(
		'start' => '113605067',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-001'
	),
	'ENSMUST00000106535' => array(
		'start' => '113606336',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-002'
	),
	'ENSMUST00000106536' => array(
		'start' => '113605464',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-003'
	),
	'ENSMUST00000123232' => array(
		'start' => '113616553',
		'end' => '113621965',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-006'
	),
	'ENSMUST00000127068' => array(
		'start' => '113627078',
		'end' => '113630079',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rnpc3-004'
	),
	'ENSMUST00000132220' => array(
		'start' => '113611133',
		'end' => '113615440',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-008'
	),
	'ENSMUST00000135712' => array(
		'start' => '113616802',
		'end' => '113621316',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-007'
	),
	'ENSMUST00000153853' => array(
		'start' => '113605067',
		'end' => '113629900',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-005'
	),
	'ENSMUST00000132353' => array(
		'start' => '113529403',
		'end' => '113532428',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a1-001'
	),
	'ENSMUST00000067980' => array(
		'start' => '113555710',
		'end' => '113577830',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-001'
	),
	'ENSMUST00000106540' => array(
		'start' => '113555953',
		'end' => '113574762',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-002'
	),
	'ENSMUST00000142505' => array(
		'start' => '113562690',
		'end' => '113574272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-003'
	),
	'ENSMUST00000172885' => array(
		'start' => '113556149',
		'end' => '113562018',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy1-005'
	),
	'ENSMUST00000174147' => array(
		'start' => '113564987',
		'end' => '113606699',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-004'
	),
	'ENSMUST00000098673' => array(
		'start' => '113249176',
		'end' => '113258837',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a5-001'
	),
	'ENSMUST00000144352' => array(
		'start' => '113257780',
		'end' => '113258651',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy2a5-002'
	),
	'ENSMUST00000179568' => array(
		'start' => '113281843',
		'end' => '113291449',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a4-001'
	),
	'ENSMUST00000179314' => array(
		'start' => '113314455',
		'end' => '113324052',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a3-001'
	),
	'ENSMUST00000098667' => array(
		'start' => '113347055',
		'end' => '113356658',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005I9_0001',
		'tax_id' => '9606',
		'chromosome' => '1',
		'seq_start' => '103687415',
		'seq_end' => '103758690',
		'region_length' => '71275',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000174876-ENSG00000187733'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000174876-ENSG00000187733		CGP	9606	1:103687415-103758690
Gene		Transcript	Position	Biotype

Notice (8): Undefined index: CIL_0005I9_0002 [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
		'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
		'ENSG00000227408' => 'amylase, alpha pseudogene 1',
		'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
		'ENSG00000234441' => null,
		'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
		'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
		'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
		'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSMUSG00000070360' => 'amylase 2a1',
		'ENSMUSG00000074264' => 'amylase 1, salivary',
		'ENSMUSG00000074268' => 'amylase 2a5',
		'ENSMUSG00000096770' => 'amylase 2a4',
		'ENSMUSG00000093931' => 'amylase 2a3',
		'ENSMUSG00000096569' => 'amylase 2a2'
	),
	'gene_name_arr' => array(
		'ENSG00000174876' => 'AMY1B',
		'ENSG00000187733' => 'AMY1C',
		'ENSG00000227408' => 'AMYP1',
		'ENSG00000237763' => 'AMY1A',
		'ENSG00000234441' => 'RP5-1108M17.5',
		'ENSG00000185946' => 'RNPC3',
		'ENSG00000236085' => 'ACTG1P4',
		'ENSG00000240038' => 'AMY2B',
		'ENSG00000243480' => 'AMY2A',
		'ENSMUSG00000027981' => 'Rnpc3',
		'ENSMUSG00000070360' => 'Amy2a1',
		'ENSMUSG00000074264' => 'Amy1',
		'ENSMUSG00000074268' => 'Amy2a5',
		'ENSMUSG00000096770' => 'Amy2a4',
		'ENSMUSG00000093931' => 'Amy2a3',
		'ENSMUSG00000096569' => 'Amy2a2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 14 => 'Bladder',
		(int) 22 => 'Brain',
		(int) 50 => 'Breast',
		(int) 60 => 'Colon',
		(int) 69 => 'Heart',
		(int) 77 => 'Kidney',
		(int) 91 => 'Liver',
		(int) 112 => 'Lung',
		(int) 121 => 'Muscle',
		(int) 128 => 'Ovary',
		(int) 143 => 'Placenta',
		(int) 153 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 90,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330330' => array(
			'start' => '103687418',
			'end' => '103696290',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-201'
		),
		'ENST00000370080' => array(
			'start' => '103687415',
			'end' => '103696454',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-001'
		),
		'ENST00000425410' => array(
			'start' => '103694980',
			'end' => '103695952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-003'
		),
		'ENST00000446703' => array(
			'start' => '103693366',
			'end' => '103696680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-002'
		),
		'ENST00000464691' => array(
			'start' => '103692427',
			'end' => '103695163',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1B-004'
		),
		'ENST00000370079' => array(
			'start' => '103750406',
			'end' => '103758690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1C-001'
		),
		'ENST00000440059' => array(
			'start' => '103713723',
			'end' => '103719871',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AMYP1-001'
		),
		'ENST00000370083' => array(
			'start' => '103655755',
			'end' => '103664554',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-001'
		),
		'ENST00000422549' => array(
			'start' => '103656018',
			'end' => '103656990',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-003'
		),
		'ENST00000430659' => array(
			'start' => '103655290',
			'end' => '103658604',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-002'
		),
		'ENST00000461518' => array(
			'start' => '103656807',
			'end' => '103659543',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'AMY1A-004'
		),
		'ENST00000494409' => array(
			'start' => '103662744',
			'end' => '103664549',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1A-005'
		),
		'ENST00000610592' => array(
			'start' => '103656222',
			'end' => '103752946',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-201'
		),
		'ENST00000438604' => array(
			'start' => '103668071',
			'end' => '103668268',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'RP5-1108M17.5-001'
		),
		'ENST00000423855' => array(
			'start' => '103525971',
			'end' => '103555239',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-008'
		),
		'ENST00000524631' => array(
			'start' => '103525691',
			'end' => '103553343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-001'
		),
		'ENST00000524641' => array(
			'start' => '103541361',
			'end' => '103547035',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-006'
		),
		'ENST00000525323' => array(
			'start' => '103546927',
			'end' => '103551263',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-007'
		),
		'ENST00000527062' => array(
			'start' => '103525757',
			'end' => '103541475',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-005'
		),
		'ENST00000531883' => array(
			'start' => '103525697',
			'end' => '103535441',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-004'
		),
		'ENST00000532117' => array(
			'start' => '103551724',
			'end' => '103553714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RNPC3-009'
		),
		'ENST00000533099' => array(
			'start' => '103525699',
			'end' => '103555112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-003'
		),
		'ENST00000533834' => array(
			'start' => '103537388',
			'end' => '103552778',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-002'
		),
		'ENST00000425123' => array(
			'start' => '103569553',
			'end' => '103570674',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ACTG1P4-001'
		),
		'ENST00000361355' => array(
			'start' => '103554700',
			'end' => '103579529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-001'
		),
		'ENST00000435302' => array(
			'start' => '103561757',
			'end' => '103572229',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-004'
		),
		'ENST00000453959' => array(
			'start' => '103565031',
			'end' => '103572200',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-005'
		),
		'ENST00000462971' => array(
			'start' => '103575315',
			'end' => '103575781',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-006'
		),
		'ENST00000477657' => array(
			'start' => '103553815',
			'end' => '103579530',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'AMY2B-002'
		),
		'ENST00000481821' => array(
			'start' => '103577387',
			'end' => '103579534',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-007'
		),
		'ENST00000491397' => array(
			'start' => '103568334',
			'end' => '103579530',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-003'
		),
		'ENST00000610648' => array(
			'start' => '103571100',
			'end' => '103579530',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-201'
		),
		'ENST00000414303' => array(
			'start' => '103617377',
			'end' => '103625780',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-001'
		),
		'ENST00000423678' => array(
			'start' => '103617446',
			'end' => '103620668',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-002'
		),
		'ENST00000497748' => array(
			'start' => '103621562',
			'end' => '103625605',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2A-003'
		),
		'ENST00000622339' => array(
			'start' => '103616811',
			'end' => '103625777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-201'
		),
		'ENSMUST00000092154' => array(
			'start' => '113605067',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-001'
		),
		'ENSMUST00000106535' => array(
			'start' => '113606336',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-002'
		),
		'ENSMUST00000106536' => array(
			'start' => '113605464',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-003'
		),
		'ENSMUST00000123232' => array(
			'start' => '113616553',
			'end' => '113621965',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-006'
		),
		'ENSMUST00000127068' => array(
			'start' => '113627078',
			'end' => '113630079',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rnpc3-004'
		),
		'ENSMUST00000132220' => array(
			'start' => '113611133',
			'end' => '113615440',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-008'
		),
		'ENSMUST00000135712' => array(
			'start' => '113616802',
			'end' => '113621316',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-007'
		),
		'ENSMUST00000153853' => array(
			'start' => '113605067',
			'end' => '113629900',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-005'
		),
		'ENSMUST00000132353' => array(
			'start' => '113529403',
			'end' => '113532428',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a1-001'
		),
		'ENSMUST00000067980' => array(
			'start' => '113555710',
			'end' => '113577830',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-001'
		),
		'ENSMUST00000106540' => array(
			'start' => '113555953',
			'end' => '113574762',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-002'
		),
		'ENSMUST00000142505' => array(
			'start' => '113562690',
			'end' => '113574272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-003'
		),
		'ENSMUST00000172885' => array(
			'start' => '113556149',
			'end' => '113562018',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy1-005'
		),
		'ENSMUST00000174147' => array(
			'start' => '113564987',
			'end' => '113606699',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-004'
		),
		'ENSMUST00000098673' => array(
			'start' => '113249176',
			'end' => '113258837',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a5-001'
		),
		'ENSMUST00000144352' => array(
			'start' => '113257780',
			'end' => '113258651',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy2a5-002'
		),
		'ENSMUST00000179568' => array(
			'start' => '113281843',
			'end' => '113291449',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a4-001'
		),
		'ENSMUST00000179314' => array(
			'start' => '113314455',
			'end' => '113324052',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a3-001'
		),
		'ENSMUST00000098667' => array(
			'start' => '113347055',
			'end' => '113356658',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
	'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
	'ENSG00000227408' => 'amylase, alpha pseudogene 1',
	'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
	'ENSG00000234441' => null,
	'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
	'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
	'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
	'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSMUSG00000070360' => 'amylase 2a1',
	'ENSMUSG00000074264' => 'amylase 1, salivary',
	'ENSMUSG00000074268' => 'amylase 2a5',
	'ENSMUSG00000096770' => 'amylase 2a4',
	'ENSMUSG00000093931' => 'amylase 2a3',
	'ENSMUSG00000096569' => 'amylase 2a2'
)
$gene_name_arr = array(
	'ENSG00000174876' => 'AMY1B',
	'ENSG00000187733' => 'AMY1C',
	'ENSG00000227408' => 'AMYP1',
	'ENSG00000237763' => 'AMY1A',
	'ENSG00000234441' => 'RP5-1108M17.5',
	'ENSG00000185946' => 'RNPC3',
	'ENSG00000236085' => 'ACTG1P4',
	'ENSG00000240038' => 'AMY2B',
	'ENSG00000243480' => 'AMY2A',
	'ENSMUSG00000027981' => 'Rnpc3',
	'ENSMUSG00000070360' => 'Amy2a1',
	'ENSMUSG00000074264' => 'Amy1',
	'ENSMUSG00000074268' => 'Amy2a5',
	'ENSMUSG00000096770' => 'Amy2a4',
	'ENSMUSG00000093931' => 'Amy2a3',
	'ENSMUSG00000096569' => 'Amy2a2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0001',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103687415',
			'seq_end' => '103758690',
			'region_length' => '71275',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174876-ENSG00000187733'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0002',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103655290',
			'seq_end' => '103752946',
			'region_length' => '97656',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000237763-ENSG00000237763'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0003',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103553815',
			'seq_end' => '103625780',
			'region_length' => '71965',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240038-ENSG00000243480'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0004',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103616811',
			'seq_end' => '103752946',
			'region_length' => '136135',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000243480-ENSG00000237763'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0005',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113529403',
			'seq_end' => '113606699',
			'region_length' => '77296',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000070360-ENSMUSG00000074264'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0006',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113249176',
			'seq_end' => '113291449',
			'region_length' => '42273',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000074268-ENSMUSG00000096770'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0007',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113314455',
			'seq_end' => '113356658',
			'region_length' => '42203',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000093931-ENSMUSG00000096569'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0008',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113347055',
			'seq_end' => '113532428',
			'region_length' => '185373',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096569-ENSMUSG00000070360'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0009',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113281843',
			'seq_end' => '113324052',
			'region_length' => '42209',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096770-ENSMUSG00000093931'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 14 => 'Bladder',
	(int) 22 => 'Brain',
	(int) 50 => 'Breast',
	(int) 60 => 'Colon',
	(int) 69 => 'Heart',
	(int) 77 => 'Kidney',
	(int) 91 => 'Liver',
	(int) 112 => 'Lung',
	(int) 121 => 'Muscle',
	(int) 128 => 'Ovary',
	(int) 143 => 'Placenta',
	(int) 153 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330330' => array(
		'start' => '103687418',
		'end' => '103696290',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-201'
	),
	'ENST00000370080' => array(
		'start' => '103687415',
		'end' => '103696454',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-001'
	),
	'ENST00000425410' => array(
		'start' => '103694980',
		'end' => '103695952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-003'
	),
	'ENST00000446703' => array(
		'start' => '103693366',
		'end' => '103696680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-002'
	),
	'ENST00000464691' => array(
		'start' => '103692427',
		'end' => '103695163',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1B-004'
	),
	'ENST00000370079' => array(
		'start' => '103750406',
		'end' => '103758690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1C-001'
	),
	'ENST00000440059' => array(
		'start' => '103713723',
		'end' => '103719871',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AMYP1-001'
	),
	'ENST00000370083' => array(
		'start' => '103655755',
		'end' => '103664554',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-001'
	),
	'ENST00000422549' => array(
		'start' => '103656018',
		'end' => '103656990',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-003'
	),
	'ENST00000430659' => array(
		'start' => '103655290',
		'end' => '103658604',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-002'
	),
	'ENST00000461518' => array(
		'start' => '103656807',
		'end' => '103659543',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'AMY1A-004'
	),
	'ENST00000494409' => array(
		'start' => '103662744',
		'end' => '103664549',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1A-005'
	),
	'ENST00000610592' => array(
		'start' => '103656222',
		'end' => '103752946',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-201'
	),
	'ENST00000438604' => array(
		'start' => '103668071',
		'end' => '103668268',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'RP5-1108M17.5-001'
	),
	'ENST00000423855' => array(
		'start' => '103525971',
		'end' => '103555239',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-008'
	),
	'ENST00000524631' => array(
		'start' => '103525691',
		'end' => '103553343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-001'
	),
	'ENST00000524641' => array(
		'start' => '103541361',
		'end' => '103547035',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-006'
	),
	'ENST00000525323' => array(
		'start' => '103546927',
		'end' => '103551263',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-007'
	),
	'ENST00000527062' => array(
		'start' => '103525757',
		'end' => '103541475',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-005'
	),
	'ENST00000531883' => array(
		'start' => '103525697',
		'end' => '103535441',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-004'
	),
	'ENST00000532117' => array(
		'start' => '103551724',
		'end' => '103553714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RNPC3-009'
	),
	'ENST00000533099' => array(
		'start' => '103525699',
		'end' => '103555112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-003'
	),
	'ENST00000533834' => array(
		'start' => '103537388',
		'end' => '103552778',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-002'
	),
	'ENST00000425123' => array(
		'start' => '103569553',
		'end' => '103570674',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ACTG1P4-001'
	),
	'ENST00000361355' => array(
		'start' => '103554700',
		'end' => '103579529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-001'
	),
	'ENST00000435302' => array(
		'start' => '103561757',
		'end' => '103572229',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-004'
	),
	'ENST00000453959' => array(
		'start' => '103565031',
		'end' => '103572200',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-005'
	),
	'ENST00000462971' => array(
		'start' => '103575315',
		'end' => '103575781',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-006'
	),
	'ENST00000477657' => array(
		'start' => '103553815',
		'end' => '103579530',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'AMY2B-002'
	),
	'ENST00000481821' => array(
		'start' => '103577387',
		'end' => '103579534',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-007'
	),
	'ENST00000491397' => array(
		'start' => '103568334',
		'end' => '103579530',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-003'
	),
	'ENST00000610648' => array(
		'start' => '103571100',
		'end' => '103579530',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-201'
	),
	'ENST00000414303' => array(
		'start' => '103617377',
		'end' => '103625780',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-001'
	),
	'ENST00000423678' => array(
		'start' => '103617446',
		'end' => '103620668',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-002'
	),
	'ENST00000497748' => array(
		'start' => '103621562',
		'end' => '103625605',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2A-003'
	),
	'ENST00000622339' => array(
		'start' => '103616811',
		'end' => '103625777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-201'
	),
	'ENSMUST00000092154' => array(
		'start' => '113605067',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-001'
	),
	'ENSMUST00000106535' => array(
		'start' => '113606336',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-002'
	),
	'ENSMUST00000106536' => array(
		'start' => '113605464',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-003'
	),
	'ENSMUST00000123232' => array(
		'start' => '113616553',
		'end' => '113621965',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-006'
	),
	'ENSMUST00000127068' => array(
		'start' => '113627078',
		'end' => '113630079',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rnpc3-004'
	),
	'ENSMUST00000132220' => array(
		'start' => '113611133',
		'end' => '113615440',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-008'
	),
	'ENSMUST00000135712' => array(
		'start' => '113616802',
		'end' => '113621316',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-007'
	),
	'ENSMUST00000153853' => array(
		'start' => '113605067',
		'end' => '113629900',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-005'
	),
	'ENSMUST00000132353' => array(
		'start' => '113529403',
		'end' => '113532428',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a1-001'
	),
	'ENSMUST00000067980' => array(
		'start' => '113555710',
		'end' => '113577830',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-001'
	),
	'ENSMUST00000106540' => array(
		'start' => '113555953',
		'end' => '113574762',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-002'
	),
	'ENSMUST00000142505' => array(
		'start' => '113562690',
		'end' => '113574272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-003'
	),
	'ENSMUST00000172885' => array(
		'start' => '113556149',
		'end' => '113562018',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy1-005'
	),
	'ENSMUST00000174147' => array(
		'start' => '113564987',
		'end' => '113606699',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-004'
	),
	'ENSMUST00000098673' => array(
		'start' => '113249176',
		'end' => '113258837',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a5-001'
	),
	'ENSMUST00000144352' => array(
		'start' => '113257780',
		'end' => '113258651',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy2a5-002'
	),
	'ENSMUST00000179568' => array(
		'start' => '113281843',
		'end' => '113291449',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a4-001'
	),
	'ENSMUST00000179314' => array(
		'start' => '113314455',
		'end' => '113324052',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a3-001'
	),
	'ENSMUST00000098667' => array(
		'start' => '113347055',
		'end' => '113356658',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005I9_0002',
		'tax_id' => '9606',
		'chromosome' => '1',
		'seq_start' => '103655290',
		'seq_end' => '103752946',
		'region_length' => '97656',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000237763-ENSG00000237763'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]
Code Context

        <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
        <?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
	'region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	),
	'gene_desc_arr' => array(
		'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
		'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
		'ENSG00000227408' => 'amylase, alpha pseudogene 1',
		'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
		'ENSG00000234441' => null,
		'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
		'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
		'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
		'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
		'ENSMUSG00000070360' => 'amylase 2a1',
		'ENSMUSG00000074264' => 'amylase 1, salivary',
		'ENSMUSG00000074268' => 'amylase 2a5',
		'ENSMUSG00000096770' => 'amylase 2a4',
		'ENSMUSG00000093931' => 'amylase 2a3',
		'ENSMUSG00000096569' => 'amylase 2a2'
	),
	'gene_name_arr' => array(
		'ENSG00000174876' => 'AMY1B',
		'ENSG00000187733' => 'AMY1C',
		'ENSG00000227408' => 'AMYP1',
		'ENSG00000237763' => 'AMY1A',
		'ENSG00000234441' => 'RP5-1108M17.5',
		'ENSG00000185946' => 'RNPC3',
		'ENSG00000236085' => 'ACTG1P4',
		'ENSG00000240038' => 'AMY2B',
		'ENSG00000243480' => 'AMY2A',
		'ENSMUSG00000027981' => 'Rnpc3',
		'ENSMUSG00000070360' => 'Amy2a1',
		'ENSMUSG00000074264' => 'Amy1',
		'ENSMUSG00000074268' => 'Amy2a5',
		'ENSMUSG00000096770' => 'Amy2a4',
		'ENSMUSG00000093931' => 'Amy2a3',
		'ENSMUSG00000096569' => 'Amy2a2'
	),
	'accession_table' => array(
		(int) 0 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 1 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 2 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 3 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 4 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 5 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 6 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 7 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		),
		(int) 8 => array(
			'region_elements' => array(
				[maximum depth reached]
			)
		)
	),
	'all_tissues' => array(
		(int) 0 => 'Adipose',
		(int) 4 => 'Adrenal',
		(int) 14 => 'Bladder',
		(int) 22 => 'Brain',
		(int) 50 => 'Breast',
		(int) 60 => 'Colon',
		(int) 69 => 'Heart',
		(int) 77 => 'Kidney',
		(int) 91 => 'Liver',
		(int) 112 => 'Lung',
		(int) 121 => 'Muscle',
		(int) 128 => 'Ovary',
		(int) 143 => 'Placenta',
		(int) 153 => 'Testis'
	),
	'column_titles' => array(
		(int) 0 => 'Region Sub-Accession',
		(int) 1 => 'Tax ID',
		(int) 2 => 'Position',
		(int) 3 => 'Region Length'
	),
	'geneviewer' => array(
		(int) 9606 => array(
			'version' => 'GRCh38',
			'coord_key' => 'Homo sapiens',
			'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCh38.2bit',
			'bwgURI' => '/static/files/GRCh38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 10090 => array(
			'version' => 'GRCm38',
			'coord_key' => 'Mus musculus',
			'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
			'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
			'desc' => 'Gene structures from GENCODE 19',
			'twoBitURI' => '/static/files/GRCm38.2bit',
			'bwgURI' => '/static/files/GRCm38.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		),
		(int) 7955 => array(
			'version' => 'Zv9',
			'coord_key' => 'Danio rerio',
			'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
			'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
			'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
			'twoBitURI' => '/static/files/Zv9.2bit',
			'bwgURI' => '/static/files/Zv9.77.bb',
			'stylesheet_uri' => '/static/files/gencode.xml',
			'collapseSuperGroups' => 'true',
			'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
		)
	),
	'transcript_count' => (int) 90,
	'longest_tissue_len' => (int) 8,
	'transcript_data' => array(
		'ENST00000330330' => array(
			'start' => '103687418',
			'end' => '103696290',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-201'
		),
		'ENST00000370080' => array(
			'start' => '103687415',
			'end' => '103696454',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-001'
		),
		'ENST00000425410' => array(
			'start' => '103694980',
			'end' => '103695952',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-003'
		),
		'ENST00000446703' => array(
			'start' => '103693366',
			'end' => '103696680',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1B-002'
		),
		'ENST00000464691' => array(
			'start' => '103692427',
			'end' => '103695163',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1B-004'
		),
		'ENST00000370079' => array(
			'start' => '103750406',
			'end' => '103758690',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1C-001'
		),
		'ENST00000440059' => array(
			'start' => '103713723',
			'end' => '103719871',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'AMYP1-001'
		),
		'ENST00000370083' => array(
			'start' => '103655755',
			'end' => '103664554',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-001'
		),
		'ENST00000422549' => array(
			'start' => '103656018',
			'end' => '103656990',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-003'
		),
		'ENST00000430659' => array(
			'start' => '103655290',
			'end' => '103658604',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-002'
		),
		'ENST00000461518' => array(
			'start' => '103656807',
			'end' => '103659543',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'AMY1A-004'
		),
		'ENST00000494409' => array(
			'start' => '103662744',
			'end' => '103664549',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY1A-005'
		),
		'ENST00000610592' => array(
			'start' => '103656222',
			'end' => '103752946',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY1A-201'
		),
		'ENST00000438604' => array(
			'start' => '103668071',
			'end' => '103668268',
			'transcript_biotype' => 'unprocessed_pseudogene',
			'transcript_name' => 'RP5-1108M17.5-001'
		),
		'ENST00000423855' => array(
			'start' => '103525971',
			'end' => '103555239',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-008'
		),
		'ENST00000524631' => array(
			'start' => '103525691',
			'end' => '103553343',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-001'
		),
		'ENST00000524641' => array(
			'start' => '103541361',
			'end' => '103547035',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-006'
		),
		'ENST00000525323' => array(
			'start' => '103546927',
			'end' => '103551263',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-007'
		),
		'ENST00000527062' => array(
			'start' => '103525757',
			'end' => '103541475',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-005'
		),
		'ENST00000531883' => array(
			'start' => '103525697',
			'end' => '103535441',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-004'
		),
		'ENST00000532117' => array(
			'start' => '103551724',
			'end' => '103553714',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'RNPC3-009'
		),
		'ENST00000533099' => array(
			'start' => '103525699',
			'end' => '103555112',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'RNPC3-003'
		),
		'ENST00000533834' => array(
			'start' => '103537388',
			'end' => '103552778',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'RNPC3-002'
		),
		'ENST00000425123' => array(
			'start' => '103569553',
			'end' => '103570674',
			'transcript_biotype' => 'processed_pseudogene',
			'transcript_name' => 'ACTG1P4-001'
		),
		'ENST00000361355' => array(
			'start' => '103554700',
			'end' => '103579529',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-001'
		),
		'ENST00000435302' => array(
			'start' => '103561757',
			'end' => '103572229',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-004'
		),
		'ENST00000453959' => array(
			'start' => '103565031',
			'end' => '103572200',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-005'
		),
		'ENST00000462971' => array(
			'start' => '103575315',
			'end' => '103575781',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-006'
		),
		'ENST00000477657' => array(
			'start' => '103553815',
			'end' => '103579530',
			'transcript_biotype' => 'nonsense_mediated_decay',
			'transcript_name' => 'AMY2B-002'
		),
		'ENST00000481821' => array(
			'start' => '103577387',
			'end' => '103579534',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-007'
		),
		'ENST00000491397' => array(
			'start' => '103568334',
			'end' => '103579530',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2B-003'
		),
		'ENST00000610648' => array(
			'start' => '103571100',
			'end' => '103579530',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2B-201'
		),
		'ENST00000414303' => array(
			'start' => '103617377',
			'end' => '103625780',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-001'
		),
		'ENST00000423678' => array(
			'start' => '103617446',
			'end' => '103620668',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-002'
		),
		'ENST00000497748' => array(
			'start' => '103621562',
			'end' => '103625605',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'AMY2A-003'
		),
		'ENST00000622339' => array(
			'start' => '103616811',
			'end' => '103625777',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'AMY2A-201'
		),
		'ENSMUST00000092154' => array(
			'start' => '113605067',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-001'
		),
		'ENSMUST00000106535' => array(
			'start' => '113606336',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-002'
		),
		'ENSMUST00000106536' => array(
			'start' => '113605464',
			'end' => '113630149',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-003'
		),
		'ENSMUST00000123232' => array(
			'start' => '113616553',
			'end' => '113621965',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-006'
		),
		'ENSMUST00000127068' => array(
			'start' => '113627078',
			'end' => '113630079',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Rnpc3-004'
		),
		'ENSMUST00000132220' => array(
			'start' => '113611133',
			'end' => '113615440',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-008'
		),
		'ENSMUST00000135712' => array(
			'start' => '113616802',
			'end' => '113621316',
			'transcript_biotype' => 'processed_transcript',
			'transcript_name' => 'Rnpc3-007'
		),
		'ENSMUST00000153853' => array(
			'start' => '113605067',
			'end' => '113629900',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Rnpc3-005'
		),
		'ENSMUST00000132353' => array(
			'start' => '113529403',
			'end' => '113532428',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a1-001'
		),
		'ENSMUST00000067980' => array(
			'start' => '113555710',
			'end' => '113577830',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-001'
		),
		'ENSMUST00000106540' => array(
			'start' => '113555953',
			'end' => '113574762',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-002'
		),
		'ENSMUST00000142505' => array(
			'start' => '113562690',
			'end' => '113574272',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-003'
		),
		'ENSMUST00000172885' => array(
			'start' => '113556149',
			'end' => '113562018',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy1-005'
		),
		'ENSMUST00000174147' => array(
			'start' => '113564987',
			'end' => '113606699',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy1-004'
		),
		'ENSMUST00000098673' => array(
			'start' => '113249176',
			'end' => '113258837',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a5-001'
		),
		'ENSMUST00000144352' => array(
			'start' => '113257780',
			'end' => '113258651',
			'transcript_biotype' => 'retained_intron',
			'transcript_name' => 'Amy2a5-002'
		),
		'ENSMUST00000179568' => array(
			'start' => '113281843',
			'end' => '113291449',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a4-001'
		),
		'ENSMUST00000179314' => array(
			'start' => '113314455',
			'end' => '113324052',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a3-001'
		),
		'ENSMUST00000098667' => array(
			'start' => '113347055',
			'end' => '113356658',
			'transcript_biotype' => 'protein_coding',
			'transcript_name' => 'Amy2a2-001'
		)
	),
	'accession_map' => array(
		'ENST000' => '9606',
		'ENSMUST' => '10090',
		'ENSDART' => '7955',
		'ENSG000' => '9606',
		'ENSMUSG' => '10090',
		'ENSDARG' => '7955'
	),
	'sci_name_map' => array(
		(int) 9606 => 'Homo_sapiens',
		(int) 10090 => 'Mus_musculus',
		(int) 7955 => 'Danio_rerio'
	),
	'UCSC_links' => array(
		(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
		(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
		(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
	),
	'expressed_region_arr' => array(
		'CIL_0005I9_0003' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0004' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0005' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0006' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0007' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0008' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		),
		'CIL_0005I9_0009' => array(
			'genes_in_region' => array(
				[maximum depth reached]
			),
			'tissues_title' => array(
				[maximum depth reached]
			)
		)
	)
)
$region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$gene_desc_arr = array(
	'ENSG00000174876' => 'amylase, alpha 1B (salivary)',
	'ENSG00000187733' => 'amylase, alpha 1C (salivary)',
	'ENSG00000227408' => 'amylase, alpha pseudogene 1',
	'ENSG00000237763' => 'amylase, alpha 1A (salivary)',
	'ENSG00000234441' => null,
	'ENSG00000185946' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSG00000236085' => 'actin, gamma 1 pseudogene 4',
	'ENSG00000240038' => 'amylase, alpha 2B (pancreatic)',
	'ENSG00000243480' => 'amylase, alpha 2A (pancreatic)',
	'ENSMUSG00000027981' => 'RNA-binding region (RNP1, RRM) containing 3',
	'ENSMUSG00000070360' => 'amylase 2a1',
	'ENSMUSG00000074264' => 'amylase 1, salivary',
	'ENSMUSG00000074268' => 'amylase 2a5',
	'ENSMUSG00000096770' => 'amylase 2a4',
	'ENSMUSG00000093931' => 'amylase 2a3',
	'ENSMUSG00000096569' => 'amylase 2a2'
)
$gene_name_arr = array(
	'ENSG00000174876' => 'AMY1B',
	'ENSG00000187733' => 'AMY1C',
	'ENSG00000227408' => 'AMYP1',
	'ENSG00000237763' => 'AMY1A',
	'ENSG00000234441' => 'RP5-1108M17.5',
	'ENSG00000185946' => 'RNPC3',
	'ENSG00000236085' => 'ACTG1P4',
	'ENSG00000240038' => 'AMY2B',
	'ENSG00000243480' => 'AMY2A',
	'ENSMUSG00000027981' => 'Rnpc3',
	'ENSMUSG00000070360' => 'Amy2a1',
	'ENSMUSG00000074264' => 'Amy1',
	'ENSMUSG00000074268' => 'Amy2a5',
	'ENSMUSG00000096770' => 'Amy2a4',
	'ENSMUSG00000093931' => 'Amy2a3',
	'ENSMUSG00000096569' => 'Amy2a2'
)
$accession_table = array(
	(int) 0 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0001',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103687415',
			'seq_end' => '103758690',
			'region_length' => '71275',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000174876-ENSG00000187733'
		)
	),
	(int) 1 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0002',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103655290',
			'seq_end' => '103752946',
			'region_length' => '97656',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000237763-ENSG00000237763'
		)
	),
	(int) 2 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0003',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103553815',
			'seq_end' => '103625780',
			'region_length' => '71965',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000240038-ENSG00000243480'
		)
	),
	(int) 3 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0004',
			'tax_id' => '9606',
			'chromosome' => '1',
			'seq_start' => '103616811',
			'seq_end' => '103752946',
			'region_length' => '136135',
			'region_type' => 'CGP',
			'el_id' => 'ENSG00000243480-ENSG00000237763'
		)
	),
	(int) 4 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0005',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113529403',
			'seq_end' => '113606699',
			'region_length' => '77296',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000070360-ENSMUSG00000074264'
		)
	),
	(int) 5 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0006',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113249176',
			'seq_end' => '113291449',
			'region_length' => '42273',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000074268-ENSMUSG00000096770'
		)
	),
	(int) 6 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0007',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113314455',
			'seq_end' => '113356658',
			'region_length' => '42203',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000093931-ENSMUSG00000096569'
		)
	),
	(int) 7 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0008',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113347055',
			'seq_end' => '113532428',
			'region_length' => '185373',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096569-ENSMUSG00000070360'
		)
	),
	(int) 8 => array(
		'region_elements' => array(
			'region_element_id' => 'CIL_0005I9_0009',
			'tax_id' => '10090',
			'chromosome' => '3',
			'seq_start' => '113281843',
			'seq_end' => '113324052',
			'region_length' => '42209',
			'region_type' => 'CGP',
			'el_id' => 'ENSMUSG00000096770-ENSMUSG00000093931'
		)
	)
)
$all_tissues = array(
	(int) 0 => 'Adipose',
	(int) 4 => 'Adrenal',
	(int) 14 => 'Bladder',
	(int) 22 => 'Brain',
	(int) 50 => 'Breast',
	(int) 60 => 'Colon',
	(int) 69 => 'Heart',
	(int) 77 => 'Kidney',
	(int) 91 => 'Liver',
	(int) 112 => 'Lung',
	(int) 121 => 'Muscle',
	(int) 128 => 'Ovary',
	(int) 143 => 'Placenta',
	(int) 153 => 'Testis'
)
$column_titles = array(
	(int) 0 => 'Region Sub-Accession',
	(int) 1 => 'Tax ID',
	(int) 2 => 'Position',
	(int) 3 => 'Region Length'
)
$geneviewer = array(
	(int) 9606 => array(
		'version' => 'GRCh38',
		'coord_key' => 'Homo sapiens',
		'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCh38.2bit',
		'bwgURI' => '/static/files/GRCh38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 10090 => array(
		'version' => 'GRCm38',
		'coord_key' => 'Mus musculus',
		'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
		'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
		'desc' => 'Gene structures from GENCODE 19',
		'twoBitURI' => '/static/files/GRCm38.2bit',
		'bwgURI' => '/static/files/GRCm38.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	),
	(int) 7955 => array(
		'version' => 'Zv9',
		'coord_key' => 'Danio rerio',
		'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
		'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
		'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
		'twoBitURI' => '/static/files/Zv9.2bit',
		'bwgURI' => '/static/files/Zv9.77.bb',
		'stylesheet_uri' => '/static/files/gencode.xml',
		'collapseSuperGroups' => 'true',
		'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
	)
)
$transcript_count = (int) 90
$longest_tissue_len = (int) 8
$transcript_data = array(
	'ENST00000330330' => array(
		'start' => '103687418',
		'end' => '103696290',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-201'
	),
	'ENST00000370080' => array(
		'start' => '103687415',
		'end' => '103696454',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-001'
	),
	'ENST00000425410' => array(
		'start' => '103694980',
		'end' => '103695952',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-003'
	),
	'ENST00000446703' => array(
		'start' => '103693366',
		'end' => '103696680',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1B-002'
	),
	'ENST00000464691' => array(
		'start' => '103692427',
		'end' => '103695163',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1B-004'
	),
	'ENST00000370079' => array(
		'start' => '103750406',
		'end' => '103758690',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1C-001'
	),
	'ENST00000440059' => array(
		'start' => '103713723',
		'end' => '103719871',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'AMYP1-001'
	),
	'ENST00000370083' => array(
		'start' => '103655755',
		'end' => '103664554',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-001'
	),
	'ENST00000422549' => array(
		'start' => '103656018',
		'end' => '103656990',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-003'
	),
	'ENST00000430659' => array(
		'start' => '103655290',
		'end' => '103658604',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-002'
	),
	'ENST00000461518' => array(
		'start' => '103656807',
		'end' => '103659543',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'AMY1A-004'
	),
	'ENST00000494409' => array(
		'start' => '103662744',
		'end' => '103664549',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY1A-005'
	),
	'ENST00000610592' => array(
		'start' => '103656222',
		'end' => '103752946',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY1A-201'
	),
	'ENST00000438604' => array(
		'start' => '103668071',
		'end' => '103668268',
		'transcript_biotype' => 'unprocessed_pseudogene',
		'transcript_name' => 'RP5-1108M17.5-001'
	),
	'ENST00000423855' => array(
		'start' => '103525971',
		'end' => '103555239',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-008'
	),
	'ENST00000524631' => array(
		'start' => '103525691',
		'end' => '103553343',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-001'
	),
	'ENST00000524641' => array(
		'start' => '103541361',
		'end' => '103547035',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-006'
	),
	'ENST00000525323' => array(
		'start' => '103546927',
		'end' => '103551263',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-007'
	),
	'ENST00000527062' => array(
		'start' => '103525757',
		'end' => '103541475',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-005'
	),
	'ENST00000531883' => array(
		'start' => '103525697',
		'end' => '103535441',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-004'
	),
	'ENST00000532117' => array(
		'start' => '103551724',
		'end' => '103553714',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'RNPC3-009'
	),
	'ENST00000533099' => array(
		'start' => '103525699',
		'end' => '103555112',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'RNPC3-003'
	),
	'ENST00000533834' => array(
		'start' => '103537388',
		'end' => '103552778',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'RNPC3-002'
	),
	'ENST00000425123' => array(
		'start' => '103569553',
		'end' => '103570674',
		'transcript_biotype' => 'processed_pseudogene',
		'transcript_name' => 'ACTG1P4-001'
	),
	'ENST00000361355' => array(
		'start' => '103554700',
		'end' => '103579529',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-001'
	),
	'ENST00000435302' => array(
		'start' => '103561757',
		'end' => '103572229',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-004'
	),
	'ENST00000453959' => array(
		'start' => '103565031',
		'end' => '103572200',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-005'
	),
	'ENST00000462971' => array(
		'start' => '103575315',
		'end' => '103575781',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-006'
	),
	'ENST00000477657' => array(
		'start' => '103553815',
		'end' => '103579530',
		'transcript_biotype' => 'nonsense_mediated_decay',
		'transcript_name' => 'AMY2B-002'
	),
	'ENST00000481821' => array(
		'start' => '103577387',
		'end' => '103579534',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-007'
	),
	'ENST00000491397' => array(
		'start' => '103568334',
		'end' => '103579530',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2B-003'
	),
	'ENST00000610648' => array(
		'start' => '103571100',
		'end' => '103579530',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2B-201'
	),
	'ENST00000414303' => array(
		'start' => '103617377',
		'end' => '103625780',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-001'
	),
	'ENST00000423678' => array(
		'start' => '103617446',
		'end' => '103620668',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-002'
	),
	'ENST00000497748' => array(
		'start' => '103621562',
		'end' => '103625605',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'AMY2A-003'
	),
	'ENST00000622339' => array(
		'start' => '103616811',
		'end' => '103625777',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'AMY2A-201'
	),
	'ENSMUST00000092154' => array(
		'start' => '113605067',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-001'
	),
	'ENSMUST00000106535' => array(
		'start' => '113606336',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-002'
	),
	'ENSMUST00000106536' => array(
		'start' => '113605464',
		'end' => '113630149',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-003'
	),
	'ENSMUST00000123232' => array(
		'start' => '113616553',
		'end' => '113621965',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-006'
	),
	'ENSMUST00000127068' => array(
		'start' => '113627078',
		'end' => '113630079',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Rnpc3-004'
	),
	'ENSMUST00000132220' => array(
		'start' => '113611133',
		'end' => '113615440',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-008'
	),
	'ENSMUST00000135712' => array(
		'start' => '113616802',
		'end' => '113621316',
		'transcript_biotype' => 'processed_transcript',
		'transcript_name' => 'Rnpc3-007'
	),
	'ENSMUST00000153853' => array(
		'start' => '113605067',
		'end' => '113629900',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Rnpc3-005'
	),
	'ENSMUST00000132353' => array(
		'start' => '113529403',
		'end' => '113532428',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a1-001'
	),
	'ENSMUST00000067980' => array(
		'start' => '113555710',
		'end' => '113577830',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-001'
	),
	'ENSMUST00000106540' => array(
		'start' => '113555953',
		'end' => '113574762',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-002'
	),
	'ENSMUST00000142505' => array(
		'start' => '113562690',
		'end' => '113574272',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-003'
	),
	'ENSMUST00000172885' => array(
		'start' => '113556149',
		'end' => '113562018',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy1-005'
	),
	'ENSMUST00000174147' => array(
		'start' => '113564987',
		'end' => '113606699',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy1-004'
	),
	'ENSMUST00000098673' => array(
		'start' => '113249176',
		'end' => '113258837',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a5-001'
	),
	'ENSMUST00000144352' => array(
		'start' => '113257780',
		'end' => '113258651',
		'transcript_biotype' => 'retained_intron',
		'transcript_name' => 'Amy2a5-002'
	),
	'ENSMUST00000179568' => array(
		'start' => '113281843',
		'end' => '113291449',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a4-001'
	),
	'ENSMUST00000179314' => array(
		'start' => '113314455',
		'end' => '113324052',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a3-001'
	),
	'ENSMUST00000098667' => array(
		'start' => '113347055',
		'end' => '113356658',
		'transcript_biotype' => 'protein_coding',
		'transcript_name' => 'Amy2a2-001'
	)
)
$accession_map = array(
	'ENST000' => '9606',
	'ENSMUST' => '10090',
	'ENSDART' => '7955',
	'ENSG000' => '9606',
	'ENSMUSG' => '10090',
	'ENSDARG' => '7955'
)
$sci_name_map = array(
	(int) 9606 => 'Homo_sapiens',
	(int) 10090 => 'Mus_musculus',
	(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
	(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
	(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
	(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
	'CIL_0005I9_0003' => array(
		'genes_in_region' => array(
			'ENSG00000185946' => array(
				[maximum depth reached]
			),
			'ENSG00000240038' => array(
				[maximum depth reached]
			),
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Adrenal',
			(int) 1 => 'Breast',
			(int) 2 => 'Colon',
			(int) 3 => 'Kidney',
			(int) 4 => 'Liver',
			(int) 5 => 'Lung',
			(int) 6 => 'Muscle',
			(int) 7 => 'Ovary',
			(int) 8 => 'Placenta',
			(int) 9 => 'Testis',
			(int) 10 => 'Bladder',
			(int) 11 => 'Kidney',
			(int) 12 => 'Muscle',
			(int) 13 => 'Ovary',
			(int) 14 => 'Brain',
			(int) 15 => 'Colon',
			(int) 16 => 'Heart',
			(int) 17 => 'Liver',
			(int) 18 => 'Lung',
			(int) 19 => 'Muscle',
			(int) 20 => 'Ovary',
			(int) 21 => 'Placenta',
			(int) 22 => 'Testis',
			(int) 23 => 'Adrenal',
			(int) 24 => 'Bladder',
			(int) 25 => 'Brain',
			(int) 26 => 'Colon',
			(int) 27 => 'Heart',
			(int) 28 => 'Kidney',
			(int) 29 => 'Liver',
			(int) 30 => 'Lung',
			(int) 31 => 'Ovary',
			(int) 32 => 'Placenta',
			(int) 33 => 'Testis',
			(int) 34 => 'Bladder',
			(int) 35 => 'Lung',
			(int) 36 => 'Brain',
			(int) 37 => 'Breast',
			(int) 38 => 'Heart',
			(int) 39 => 'Liver',
			(int) 40 => 'Lung',
			(int) 41 => 'Ovary',
			(int) 42 => 'Liver',
			(int) 43 => 'Adipose',
			(int) 44 => 'Adrenal',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Colon',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Bladder',
			(int) 56 => 'Brain',
			(int) 57 => 'Liver',
			(int) 58 => 'Muscle',
			(int) 59 => 'Brain',
			(int) 60 => 'Breast',
			(int) 61 => 'Testis',
			(int) 62 => 'Breast',
			(int) 63 => 'Kidney',
			(int) 64 => 'Testis',
			(int) 65 => 'Colon'
		)
	),
	'CIL_0005I9_0004' => array(
		'genes_in_region' => array(
			'ENSG00000243480' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Ovary',
			(int) 1 => 'Adrenal',
			(int) 2 => 'Brain',
			(int) 3 => 'Testis',
			(int) 4 => 'Brain',
			(int) 5 => 'Kidney',
			(int) 6 => 'Brain',
			(int) 7 => 'Breast',
			(int) 8 => 'Testis',
			(int) 9 => 'Breast',
			(int) 10 => 'Kidney',
			(int) 11 => 'Testis',
			(int) 12 => 'Colon'
		)
	),
	'CIL_0005I9_0005' => array(
		'genes_in_region' => array(
			'ENSMUSG00000027981' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Bladder',
			(int) 1 => 'Brain',
			(int) 2 => 'Colon',
			(int) 3 => 'Heart',
			(int) 4 => 'Kidney',
			(int) 5 => 'Liver',
			(int) 6 => 'Ovary',
			(int) 7 => 'Placenta',
			(int) 8 => 'Adrenal',
			(int) 9 => 'Bladder',
			(int) 10 => 'Brain',
			(int) 11 => 'Colon',
			(int) 12 => 'Heart',
			(int) 13 => 'Kidney',
			(int) 14 => 'Liver',
			(int) 15 => 'Lung',
			(int) 16 => 'Ovary',
			(int) 17 => 'Placenta',
			(int) 18 => 'Testis',
			(int) 19 => 'Adipose',
			(int) 20 => 'Adrenal',
			(int) 21 => 'Bladder',
			(int) 22 => 'Brain',
			(int) 23 => 'Breast',
			(int) 24 => 'Colon',
			(int) 25 => 'Heart',
			(int) 26 => 'Kidney',
			(int) 27 => 'Liver',
			(int) 28 => 'Lung',
			(int) 29 => 'Muscle',
			(int) 30 => 'Ovary',
			(int) 31 => 'Placenta',
			(int) 32 => 'Testis',
			(int) 33 => 'Brain',
			(int) 34 => 'Ovary',
			(int) 35 => 'Placenta',
			(int) 36 => 'Testis',
			(int) 37 => 'Adrenal',
			(int) 38 => 'Placenta',
			(int) 39 => 'Testis',
			(int) 40 => 'Brain',
			(int) 41 => 'Liver',
			(int) 42 => 'Adipose',
			(int) 43 => 'Adrenal',
			(int) 44 => 'Bladder',
			(int) 45 => 'Brain',
			(int) 46 => 'Breast',
			(int) 47 => 'Heart',
			(int) 48 => 'Kidney',
			(int) 49 => 'Liver',
			(int) 50 => 'Lung',
			(int) 51 => 'Muscle',
			(int) 52 => 'Ovary',
			(int) 53 => 'Placenta',
			(int) 54 => 'Testis',
			(int) 55 => 'Adipose',
			(int) 56 => 'Brain',
			(int) 57 => 'Breast',
			(int) 58 => 'Heart',
			(int) 59 => 'Kidney',
			(int) 60 => 'Liver',
			(int) 61 => 'Ovary',
			(int) 62 => 'Testis'
		)
	),
	'CIL_0005I9_0006' => array(
		'genes_in_region' => array(
			'ENSMUSG00000074268' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0007' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0008' => array(
		'genes_in_region' => array(
			'ENSMUSG00000070360' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096569' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	),
	'CIL_0005I9_0009' => array(
		'genes_in_region' => array(
			'ENSMUSG00000093931' => array(
				[maximum depth reached]
			),
			'ENSMUSG00000096770' => array(
				[maximum depth reached]
			)
		),
		'tissues_title' => array(
			(int) 0 => 'Brain',
			(int) 1 => 'Liver',
			(int) 2 => 'Brain',
			(int) 3 => 'Liver'
		)
	)
)
$accession = array(
	'region_elements' => array(
		'region_element_id' => 'CIL_0005I9_0002',
		'tax_id' => '9606',
		'chromosome' => '1',
		'seq_start' => '103655290',
		'seq_end' => '103752946',
		'region_length' => '97656',
		'region_type' => 'CGP',
		'el_id' => 'ENSG00000237763-ENSG00000237763'
	)
)
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108

Source ID		Type	Tax ID	Position
ENSG00000237763-ENSG00000237763		CGP	9606	1:103655290-103752946
Gene		Transcript	Position	Biotype