C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA-binding region (RNP1, RRM) containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092154 Rnpc3-001 ENSMUSG00000027981 10090 - 3:113605067-113630149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverOvaryPlacentaENSMUST00000092154
Transcript ID Bladder Brain Colon Heart Kidney Liver Ovary Placenta
ENSMUST00000092154 3.413±0.38 4.754±2.45 0.907±0.24 0.658±0.00 1.146±0.00 3.614±1.36 2.789±0.00 0.995±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I9 CIL_0005I9_0005 CGP 3:113529403-113606699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423855 RNPC3-008 protein_coding Homo_sapiens 0 1760
ENST00000524631 RNPC3-001 protein_coding Homo_sapiens 0 1869
ENST00000524641 RNPC3-006 protein_coding Homo_sapiens 0 394
ENST00000525323 RNPC3-007 retained_intron Homo_sapiens 0 254
ENST00000527062 RNPC3-005 protein_coding Homo_sapiens 0 833
ENST00000531883 RNPC3-004 protein_coding Homo_sapiens 0 575
ENST00000532117 RNPC3-009 nonsense_mediated_decay Homo_sapiens 3.00018e-42 174
ENST00000533099 RNPC3-003 protein_coding Homo_sapiens 0 1921
ENST00000533834 RNPC3-002 retained_intron Homo_sapiens 0 556
ENST00000605810 RP11-963H1.1-001 processed_pseudogene Homo_sapiens 0 1476

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