C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA-binding region (RNP1, RRM) containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106536 Rnpc3-003 ENSMUSG00000027981 10090 - 3:113605464-113630149 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106536 5.299±0.00 11.764±3.15 4.035±0.63 6.654±0.38 8.766±1.81 4.720±1.40 0.977±0.00 1.422±0.10 5.934±1.52 3.767±1.28 2.952±0.78 11.407±4.87 7.555±1.72 2.691±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005I9 CIL_0005I9_0005 CGP 3:113529403-113606699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005634 ISS nucleus
GO:0005689 ISS U12-type spliceosomal complex
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000423855 RNPC3-008 protein_coding Homo_sapiens 0 1855
ENST00000524631 RNPC3-001 protein_coding Homo_sapiens 0 1773
ENST00000524641 RNPC3-006 protein_coding Homo_sapiens 0 394
ENST00000525323 RNPC3-007 retained_intron Homo_sapiens 0 254
ENST00000527062 RNPC3-005 protein_coding Homo_sapiens 0 833
ENST00000531883 RNPC3-004 protein_coding Homo_sapiens 0 575
ENST00000533099 RNPC3-003 protein_coding Homo_sapiens 0 1760
ENST00000533834 RNPC3-002 retained_intron Homo_sapiens 0 556
ENST00000605810 RP11-963H1.1-001 processed_pseudogene Homo_sapiens 0 1476

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