C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102915 Smc2-001 ENSMUSG00000028312 10090 + 4:52439243-52488260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000102915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000102915 0.123±0.03 2.617±1.07 0.172±0.00 1.684±0.49 0.520±0.27 1.208±0.20 0.155±0.08 0.329±0.13 4.077±4.77 0.416±0.25 1.155±0.67 2.673±1.44 1.288±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001QK CIL_0001QK_0002 CGP 4:51216678-52488260

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000793 IDA condensed chromosome
GO:0000796 IEA condensin complex
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007076 IEA mitotic chromosome condensation
GO:0010032 IMP meiotic chromosome condensation
GO:0045132 IMP meiotic chromosome segregation
GO:0046982 IEA protein heterodimerization activity
GO:0051383 IMP kinetochore organization
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109416 smc2-001 protein_coding Danio_rerio 0 322
ENSDART00000008616 smc2-201 protein_coding Danio_rerio 0 316
ENST00000286398 SMC2-201 protein_coding Homo_sapiens 0 4447
ENST00000374787 SMC2-002 protein_coding Homo_sapiens 0 4433
ENST00000374793 SMC2-001 protein_coding Homo_sapiens 0 4447
ENST00000440179 SMC2-004 protein_coding Homo_sapiens 0 701
ENST00000493955 SMC2-003 nonsense_mediated_decay Homo_sapiens 0 728

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