C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028369 Svep1 10090 - 4:58042442-58206859 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042850 Svep1-001 58042442-58206596 protein_coding
  ENSMUST00000128783 Svep1-002 58144820-58206859 processed_transcript
  ENSMUST00000146329 Svep1-003 58178103-58206688 processed_transcript
  ENSMUST00000149152 Svep1-004 58143459-58206612 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042850 6.035±1.80 1.265±0.53 11.717±1.13 0.408±0.25 6.386±2.12 3.219±1.98 1.332±0.57 4.176±0.86 0.140±0.11 8.769±1.12 0.631±0.09 2.067±0.64 3.051±1.23 0.298±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PS CIL_0007PS_0002 VISTA 4:57545561-58147767
CIL_0007IH CIL_0007IH_0002 CGP 4:57984027-58206859
CIL_00016G CIL_00016G_0002 CGP 4:58042442-58374303

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005509 IEA calcium ion binding
GO:0005576 ISS extracellular region
GO:0005737 IEA cytoplasm
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013526 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein_coding Danio_rerio
ENSG00000165124 SVEP1 sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein_coding Homo_sapiens

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