C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042850 Svep1-001 ENSMUSG00000028369 10090 - 4:58042442-58206596 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042850 6.035±1.80 1.265±0.53 11.717±1.13 0.408±0.25 6.386±2.12 3.219±1.98 1.332±0.57 4.176±0.86 0.140±0.11 8.769±1.12 0.631±0.09 2.067±0.64 3.051±1.23 0.298±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PS CIL_0007PS_0002 VISTA 4:57545561-58147767
CIL_0007IH CIL_0007IH_0002 CGP 4:57984027-58206859
CIL_00016G CIL_00016G_0002 CGP 4:58042442-58374303

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0005509 IEA calcium ion binding
GO:0005576 ISS extracellular region
GO:0005737 IEA cytoplasm
GO:0007155 IEA cell adhesion
GO:0008150 ND biological_process
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000050855 notch1b-201 protein_coding Danio_rerio 0.00002 58
ENSDART00000130888 notch1b-001 protein_coding Danio_rerio 0.00002 58
ENST00000297826 SVEP1-004 protein_coding Homo_sapiens 0 4381
ENST00000374461 SVEP1-001 protein_coding Homo_sapiens 0 2566
ENST00000374469 SVEP1-003 protein_coding Homo_sapiens 0 9799
ENST00000401783 SVEP1-201 protein_coding Homo_sapiens 0 9760
ENST00000467821 SVEP1-002 processed_transcript Homo_sapiens 0 3808

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