C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007PS_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm261 VISTA 9606 9:109825819-110428061
GeneTranscriptPositionBiotype
ENSG00000165124 (SVEP1)
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 		ENST00000297826 (SVEP1-004) 110365256-110427758 protein_coding
ENST00000374461 (SVEP1-001) 110475883-110579880 protein_coding
ENST00000374469 (SVEP1-003) 110365256-110579738 protein_coding
ENST00000401783 (SVEP1-201) 110365251-110579880 protein_coding
ENST00000467821 (SVEP1-002) 110442479-110550054 processed_transcript
ENST00000476205 (SVEP1-005) 110376811-110379378 processed_transcript
ENSG00000188959 (C9orf152)
chromosome 9 open reading frame 152 		ENST00000400613 (C9orf152-001) 110199561-110208189 protein_coding
ENST00000473442 (C9orf152-002) 110190048-110207480 processed_transcript
ENSG00000204193 (TXNDC8)
thioredoxin domain containing 8 (spermatozoa) 		ENST00000374507 (TXNDC8-002) 110322461-110337847 protein_coding
ENST00000374510 (TXNDC8-001) 110303587-110337808 protein_coding
ENST00000374511 (TXNDC8-201) 110303521-110337884 protein_coding
ENST00000423740 (TXNDC8-004) 110303626-110337808 protein_coding
ENSG00000206658 (RNU6-1039P)
RNA, U6 small nuclear 1039, pseudogene 		ENST00000383931 (RNU6-1039P-201) 110369592-110369698 snRNA
ENSG00000228053 (RP11-151F5.2)
 ENST00000418441 (RP11-151F5.2-001) 110024881-110025358 processed_pseudogene
ENSG00000241978 (AKAP2)
A kinase (PRKA) anchor protein 2 		ENST00000259318 (AKAP2-003) 110125501-110168811 protein_coding
ENST00000374525 (AKAP2-001) 110048696-110172512 protein_coding
ENST00000434623 (AKAP2-006) 110048598-110169909 protein_coding
ENST00000471798 (AKAP2-004) 110127646-110136334 processed_transcript
ENST00000480388 (AKAP2-007) 110090197-110138426 protein_coding
ENST00000482335 (AKAP2-002) 110138171-110168889 processed_transcript
ENST00000485762 (AKAP2-005) 110148528-110168406 processed_transcript
ENST00000495980 (AKAP2-008) 110048698-110168633 nonsense_mediated_decay
CIL_0007PS_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm261 VISTA 10090 4:57545561-58147767
GeneTranscriptPositionBiotype
ENSMUSG00000028367 (Txn1)
thioredoxin 1 		ENSMUST00000030051 (Txn1-001) 57943373-57956411 protein_coding
ENSMUSG00000028369 (Svep1)
sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 		ENSMUST00000042850 (Svep1-001) 58042442-58206596 protein_coding
ENSMUST00000128783 (Svep1-002) 58144820-58206859 processed_transcript
ENSMUST00000146329 (Svep1-003) 58178103-58206688 processed_transcript
ENSMUST00000149152 (Svep1-004) 58143459-58206612 processed_transcript
ENSMUSG00000038709 (Txndc8)
thioredoxin domain containing 8 		ENSMUST00000102897 (Txndc8-001) 57984027-58009124 protein_coding
ENSMUST00000139256 (Txndc8-003) 57984029-58000310 protein_coding
ENSMUST00000154540 (Txndc8-002) 57984027-58009025 processed_transcript
ENSMUSG00000052117 (D630039A03Rik)
RIKEN cDNA D630039A03 gene 		ENSMUST00000063816 (D630039A03Rik-001) 57908483-57916297 protein_coding
ENSMUSG00000073846 (Gm12526)
predicted gene 12526 		ENSMUST00000154462 (Gm12526-001) 57757739-57763901 processed_transcript
ENSMUSG00000089286 (Gm24277)
predicted gene, 24277 		ENSMUST00000158661 (Gm24277-201) 57762607-57762710 snRNA
ENSMUSG00000089945 (Palm2Akap2)
Palm2-Akap2 readthrough transcript 		ENSMUST00000098066 (Palm2Akap2-002) 57568179-57896982 nonsense_mediated_decay
ENSMUST00000126465 (Palm2Akap2-003) 57568330-57854584 nonsense_mediated_decay
ENSMUST00000150412 (Palm2Akap2-001) 57637823-57894718 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PS_0001ENSG00000165124ENST00000297826ENST00000374461ENST00000374469ENST00000401783ENST00000467821ENST00000476205ENSG00000188959ENST00000400613ENST00000473442ENSG00000204193ENST00000374507ENST00000374510ENST00000374511ENST00000423740ENSG00000206658ENST00000383931ENSG00000228053ENST00000418441ENSG00000241978ENST00000259318ENST00000374525ENST00000434623ENST00000471798ENST00000480388ENST00000482335ENST00000485762ENST00000495980CIL_0007PS_0002ENSMUSG00000028367ENSMUST00000030051ENSMUSG00000028369ENSMUST00000042850ENSMUST00000128783ENSMUST00000146329ENSMUST00000149152ENSMUSG00000038709ENSMUST00000102897ENSMUST00000139256ENSMUST00000154540ENSMUSG00000052117ENSMUST00000063816ENSMUSG00000073846ENSMUST00000154462ENSMUSG00000089286ENSMUST00000158661ENSMUSG00000089945ENSMUST00000098066ENSMUST00000126465ENSMUST00000150412
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007PS_0001ENSG00000165124ENST00000297826ENST00000374461ENST00000374469ENST00000401783ENST00000467821ENSG00000188959ENST00000400613ENST00000473442ENSG00000204193ENST00000374507ENST00000374511ENSG00000206658ENST00000383931ENSG00000228053ENST00000418441ENSG00000241978ENST00000259318ENST00000374525ENST00000434623CIL_0007PS_0002ENSMUSG00000028367ENSMUST00000030051ENSMUSG00000028369ENSMUST00000042850ENSMUSG00000038709ENSMUST00000102897ENSMUST00000139256ENSMUST00000154540ENSMUSG00000052117ENSMUST00000063816ENSMUSG00000073846ENSMUST00000154462ENSMUSG00000089286ENSMUST00000158661ENSMUSG00000089945ENSMUST00000098066ENSMUST00000150412
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165124 ENST00000297826 38.791±0.00 16.149±0.00 N/A 0.323±0.00 6.586±4.64 26.197±0.00 2.107±0.00 2.343±2.13 0.756±0.00 14.085±0.00 2.089±0.00 1.613±1.28 33.048±12.81 4.359±3.86
ENST00000374461 N/A N/A N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A 1.401±0.00 N/A N/A
ENST00000374469 26.541±0.00 N/A 0.259±0.00 0.233±0.00 3.195±0.00 10.949±0.00 0.966±0.00 1.040±0.00 1.272±1.15 3.999±1.02 N/A 0.870±0.00 10.260±3.43 2.256±0.00
ENST00000401783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.00 N/A 0.062±0.00
ENST00000467821 N/A N/A N/A N/A N/A N/A 0.486±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000476205 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188959 ENST00000400613 0.033±0.00 0.050±0.00 0.077±0.00 0.074±0.00 1.405±1.04 6.518±0.86 0.031±0.00 0.017±0.00 0.148±0.12 2.100±0.91 0.076±0.00 4.391±4.07 0.081±0.03 0.053±0.01
ENST00000473442 0.106±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000204193 ENST00000374507 N/A N/A 0.046±0.00 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A 0.025±0.00 0.024±0.00 0.723±0.00
ENST00000374510 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.447±0.00
ENST00000423740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000206658 ENST00000383931 0.530±0.00 N/A N/A N/A 0.895±0.00 0.167±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228053 ENST00000418441 0.026±0.00 0.027±0.00 N/A N/A N/A 0.251±0.00 0.084±0.03 0.027±0.00 N/A N/A 0.025±0.00 0.056±0.01 N/A N/A
ENSG00000241978 ENST00000259318 N/A N/A 3.360±0.00 N/A 5.156±0.00 2.672±0.00 2.683±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000374525 107.327±0.00 18.737±0.00 N/A 6.819±0.00 13.479±11.61 11.496±10.36 11.985±7.77 11.705±0.00 1.630±0.00 47.136±31.02 4.209±0.00 5.348±1.96 15.682±4.42 0.846±0.00
ENST00000434623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.792±0.00 23.378±0.00 1.750±0.00
ENST00000471798 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495980 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028367 ENSMUST00000030051 64.237±19.09 67.586±5.69 91.661±19.25 41.272±26.61 41.740±15.35 324.712±67.92 40.463±6.30 210.066±13.86 154.569±27.14 91.184±25.81 30.084±2.79 55.631±18.15 193.253±137.91 11.428±5.75
ENSMUSG00000028369 ENSMUST00000042850 6.035±1.80 1.265±0.53 11.717±1.13 0.408±0.25 6.386±2.12 3.219±1.98 1.332±0.57 4.176±0.86 0.140±0.11 8.769±1.12 0.631±0.09 2.067±0.64 3.051±1.23 0.298±0.17
ENSMUST00000128783 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146329 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149152 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038709 ENSMUST00000102897 N/A N/A N/A N/A N/A N/A 0.136±0.00 N/A N/A N/A N/A 0.060±0.00 N/A 120.438±45.40
ENSMUST00000139256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A
ENSMUST00000154540 N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000052117 ENSMUST00000063816 1.067±1.05 2.913±0.35 1.811±0.20 0.082±0.07 0.547±0.14 16.850±1.99 0.105±0.03 8.219±0.18 3.864±3.27 2.499±0.30 0.035±0.00 4.024±1.03 0.049±0.06 0.061±0.04
ENSMUSG00000073846 ENSMUST00000154462 0.230±0.03 0.250±0.14 0.150±0.03 0.128±0.07 0.141±0.05 0.133±0.00 0.122±0.09 0.199±0.15 0.017±0.01 0.185±0.10 N/A 0.285±0.17 0.293±0.21 0.199±0.10
ENSMUSG00000089286 ENSMUST00000158661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.671±0.00 N/A N/A
ENSMUSG00000089945 ENSMUST00000098066 N/A N/A N/A N/A 2.969±0.60 N/A 3.057±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150412 N/A N/A N/A 12.891±0.00 N/A N/A N/A N/A N/A N/A N/A 11.541±0.00 20.423±1.71 2.209±0.50

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