C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin, light polypeptide (Lca)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028478 Clta 10090 + 4:44004452-44032846 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000107845 Clta-004 44012686-44032846 protein_coding
  ENSMUST00000107846 Clta-001 44004452-44032846 protein_coding
  ENSMUST00000107847 Clta-005 44012638-44032846 protein_coding
  ENSMUST00000107849 Clta-002 44012678-44032846 protein_coding
  ENSMUST00000107851 Clta-003 44012678-44032846 protein_coding
  ENSMUST00000170241 Clta-201 44012643-44032845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107845ENSMUST00000107847ENSMUST00000107849ENSMUST00000107851ENSMUST00000170241
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107845 N/A N/A N/A N/A 17.556±0.00 N/A N/A 18.314±2.12 11.757±0.16 N/A 3.528±0.62 100.345±42.12 47.240±1.10 3.241±0.00
ENSMUST00000107847 N/A N/A N/A N/A N/A N/A 13.104±2.64 N/A N/A N/A 12.688±0.68 N/A N/A N/A
ENSMUST00000107849 N/A N/A N/A 90.607±23.93 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107851 N/A N/A N/A 64.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170241 97.689±13.58 119.187±11.54 148.410±7.73 42.565±9.22 90.543±44.12 147.114±17.57 20.855±2.89 128.394±10.53 115.055±49.09 105.253±8.47 10.599±2.01 130.533±33.12 232.698±63.09 16.175±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006K2 CIL_0006K2_0002 CGP 4:43983483-44032846
CIL_0006K3 CIL_0006K3_0002 CGP 4:44004452-44084177

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005905 IEA coated pit
GO:0006886 IEA intracellular protein transport
GO:0006897 IEA endocytosis
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030118 IEA clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0030136 IEA clathrin-coated vesicle
GO:0032050 IEA clathrin heavy chain binding
GO:0042277 IEA peptide binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0071439 IEA clathrin complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045618 clta clathrin, light chain (Lca) protein_coding Danio_rerio
ENSG00000122705 CLTA clathrin, light chain A protein_coding Homo_sapiens

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